Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq130 159 8e-34 seq20 159 8e-34 seq120 113 1e-19 seq490 102 2e-16 >seq130 Length=1646628 Score = 159 bits (176), Expect = 8e-34 Identities = 133/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 1155606 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1155547 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 1155546 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1155487 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || || | ||||| |||||||| ||| | ||||| || |||| Sbjct 1155486 ACCTTATGGTGGATTGGTATTAAGTGGGTTGCAGGTGGGCAAG 1155444 >seq20 Length=4226088 Score = 159 bits (176), Expect = 8e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || |||||| Sbjct 1306286 ATGCCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 1306227 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || |||||||| || |||||||| |||||||| Sbjct 1306226 GACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 1306167 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 1306166 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 1306107 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || || || || ||||| ||||||||||| Sbjct 1306106 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 1306054 >seq120 Length=4789148 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 1818936 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 1818877 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 1818876 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1818817 Query 269258 GA 269259 || Sbjct 1818816 GA 1818815 >seq490 Length=1639929 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || |||||||| || || ||||| || |||||||| || |||||||| Sbjct 130629 GGAGAACGTGTTGTAGCTTTTGCAGCAGTGGAAGGAATTTTCTTTTCTGGCTCTTTTGCA 130570 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 130569 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTT 130510 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 130509 ATCAGTAGAGATGA 130496 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | || || | ||||| || || | Sbjct 132727 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAGGCTCGGTGTTTCTATGGCT 132668 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 132667 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACA 132608 Query 269016 T 269016 | Sbjct 132607 T 132607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150992372667284