Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq20 86.0 5e-12 >seq20 Length=4226088 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || ||| ||||||||| |||||||| || | || || ||| |||| | Sbjct 1306950 CACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGA-AAGGGTGCGCCCGTCTT 1306892 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | | || || | ||||||||| ||| | | ||||||||| Sbjct 1306891 CCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCCT 1306832 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | | ||||| || | | ||| ||| | || ||||| | Sbjct 1306831 GGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCT 1306772 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| |||||||| Sbjct 1306771 TGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1306741 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| |||||| || |||||||| |||| || ||| |||| || Sbjct 1306266 CACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTC 1306207 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || | | || | | ||||||||| || | | |||||||||| Sbjct 1306206 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTG 1306147 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | | ||||| || | | ||| ||| | || ||||| || Sbjct 1306146 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTT 1306087 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 1306086 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 1306057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421109896945523