Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 8e-16 >seq20 Length=4226088 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||||||||||||| || ||| ||||||||| |||||||| || | Sbjct 1306511 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC-GGA 1306453 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| |||| |||| |||||||| ||||| |||| | ||||||||| ||| Sbjct 1306452 AAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGG 1306393 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1306392 AATGCCCTCCTTGTCC 1306377 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||||||||||||| || ||| ||||||||| |||||||| || | Sbjct 1306739 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC-GGA 1306681 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| |||| |||| |||||||| ||||| |||| | ||||||||| ||| Sbjct 1306680 AAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGG 1306621 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1306620 AATGCCCTCCTTGTCC 1306605 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||||||||||||| || ||| ||||||||| |||||||| || | | Sbjct 1306283 CCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1306224 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| |||| |||| |||||||| ||||| ||||| | ||||||||| Sbjct 1306223 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATC 1306171 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||||||||||||| || ||| |||||| || |||||||| || | Sbjct 1306968 ACCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTC-GG 1306910 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || ||| |||| |||| |||||||| ||||| |||| | ||||||||| || Sbjct 1306909 AAAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCG 1306850 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 1306849 GAATGCCCTCCTTGTCC 1306833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396929210753446