Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq44 122 8e-23 seq20 120 3e-22 >seq44 Length=2740361 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| || || ||||| | Sbjct 713058 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 713117 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||||||||| || ||||| |||||| Sbjct 713118 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 713177 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | |||||| |||| ||| | Sbjct 713178 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 713237 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || |||||||| |||||||| Sbjct 713238 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 713272 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | ||||| || || || || ||||| ||| || ||||| | Sbjct 712146 CGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 712205 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || ||||| |||||| Sbjct 712206 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 712265 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | |||||| |||| ||| | Sbjct 712266 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 712325 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| || || ||||| |||||||| Sbjct 712326 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 712360 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| || || ||||| | Sbjct 712602 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 712661 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||||||||| || || || |||||| Sbjct 712662 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTG 712721 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| || | | || | |||||| | ||| || |||| ||| | Sbjct 712722 TCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 712781 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||||| ||||| || || ||||| ||||||||| Sbjct 712782 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 712817 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| ||| || ||||| | Sbjct 712830 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 712889 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||||||||| || ||||| |||||| Sbjct 712890 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 712949 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | |||||| || | ||| | Sbjct 712950 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 713009 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||||||||| || || || || ||||||||| Sbjct 713010 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 713045 >seq20 Length=4226088 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || ||||| ||||| || ||||| ||| | ||||| Sbjct 1306955 CGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCG 1306896 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | ||||||||| || || |||||||||||| Sbjct 1306895 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTG 1306836 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 1306835 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 1306776 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 1306775 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 1306740 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || ||||| || || || ||||| ||| | ||||| Sbjct 1306499 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCG 1306440 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | ||||||||| || || |||||||||||| Sbjct 1306439 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTG 1306380 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 1306379 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 1306320 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 1306319 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 1306284 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || ||||| || || || ||||| ||| | ||||| Sbjct 1306727 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCG 1306668 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||| | ||||||||| || || |||||||||||| Sbjct 1306667 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTG 1306608 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 1306607 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 1306548 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 1306547 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 1306512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475337209893520