Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq406 116 3e-20 seq608 98.7 8e-15 >seq406 Length=3112830 Score = 116 bits (128), Expect = 3e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 2051320 GTTACTAATGCTGTCGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACG 2051261 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || |||||||| || || || ||| Sbjct 2051260 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAACGAGCCGACAGCT 2051201 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 2051200 GCTGCCATAGCCTATGGTCTGGACAAA 2051174 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || || ||||| || ||||||||||||||| Sbjct 2049600 GGTATTCCCCCTGCTCCCAGAGGCGTACCTCAGATCGAAGTAACCTTCGATATCGATGCC 2049541 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || || || ||||| ||| ||||| ||||| Sbjct 2049540 AACGGCATCTTGAACGTGTCTGCTGTGGATAA 2049509 >seq608 Length=2992917 Score = 98.7 bits (108), Expect = 8e-15 Identities = 355/551 (64%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || || || ||||| | || |||| ||| Sbjct 530652 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 530593 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || || || | ||||| Sbjct 530592 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACT 530533 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || ||||| || || | || | || || |||||||| Sbjct 530532 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 530473 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | ||||| | | | | |||| | || || ||||| Sbjct 530472 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 530413 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || || | ||| || || | | ||| Sbjct 530412 GACATGAAGCACTGGCCGTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 530353 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 530352 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 530298 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTA 550405 | | || ||||| | | || || | | | || | ||| ||| || ||| || Sbjct 530297 TCACCAAGATGAAGGAGATTGCTGAGGCGTATCTGGGGCGC-AAGGTACAGAATGCTGTC 530239 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || || || || || |||||||| || || || || || ||||||||||| Sbjct 530238 ATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACC 530179 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || |||| |||||||| | |||||||||||||| || || || || || | || ||| Sbjct 530178 ATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCCGCGATAGCCTAT 530119 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 530118 GGCCTGGACAA 530108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027840459631270