Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq608 105 5e-17 seq626 89.7 4e-12 seq449 87.8 1e-11 >seq608 Length=2992917 Score = 105 bits (116), Expect = 5e-17 Identities = 278/418 (67%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | || || || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 529191 CGGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 529250 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| ||| | | |||| | ||||| || || || | Sbjct 529251 CTCCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 529310 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGA 281601 | || | | ||||||||| | | |||| || | || | | || || ||||| Sbjct 529311 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGA 529368 Query 281602 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || || || |||| ||| ||| |||||| || ||||| | | || | | Sbjct 529369 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTAGGAATGGTGGTGTTACGCTTGATGAGAG 529427 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 529428 CAGTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 529487 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || || | || ||| | | || | || ||||||||||| | |||||| | Sbjct 529488 GCAGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGC 529547 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 | || |||||||| ||||||||||| | | | || || | ||| |||||||| || Sbjct 529548 CGTAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 529605 >seq626 Length=131727 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 || || ||| | || || || ||||| || || ||| | ||| | | | ||||||||| Sbjct 90028 GTGGCTACAGTGGCGTTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 90087 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 90088 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 90147 Query 131300 GG 131301 || Sbjct 90148 GG 90149 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 || || ||| | || || || ||||| || || ||| | ||| | | | ||||||||| Sbjct 93769 GTGGCTACAGTGGCGTTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 93828 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 93829 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 93888 Query 131300 GG 131301 || Sbjct 93889 GG 93890 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 || || ||| | || || || ||||| || || ||| | ||| | | | ||||||||| Sbjct 97565 GTGGCTACAGTGGCGTTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 97624 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 97625 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 97684 Query 131300 GG 131301 || Sbjct 97685 GG 97686 >seq449 Length=3059481 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || |||||||||||||||| ||||| | ||||||||| | || |||||||| || || Sbjct 1176349 GGCTCATTAATAATTCTCATCACATTCAACCCAGCAATTGTCCCAGCATCTTTTGTAGCC 1176290 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | || | ||||||||| || || || ||||||| ||| |||| Sbjct 1176289 TGACGCTGAGCATCGTTAAAGTAGGCTGGCACAGTAACAACAGCAT 1176244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739279137012198