Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq68 147 3e-30 seq707 120 4e-22 >seq68 Length=3481568 Score = 147 bits (162), Expect = 3e-30 Identities = 580/903 (64%), Gaps = 22/903 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || || || || || ||||| Sbjct 2574500 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACCCCACTGCAT 2574441 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | ||| || || || |||| |||||||| || ||||| Sbjct 2574440 GGTGGGTAAGGTGCACCCTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTG 2574381 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || || ||||||| |||| || | ||| || || || || Sbjct 2574380 GCCAGTGCATTCATGTCAGAAACATCATACTTGT-CACTAGAAGACACTGCACCTGGGAC 2574322 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || ||||| | || ||| ||||| || || || || || | Sbjct 2574321 TTCAGGGATTCTCTGAATTGTTGCCCATAAGTATTCATCTGGGCTGTAAGTATCTTTTGC 2574262 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTATAG-AAT--GTAAGAGACGTAGGACCT 162455 |||||| || |||| | || |||| | | | ||| ||| || | || Sbjct 2574261 CCACTCAATTAACT---TAACTATTTTGCTGCTTTGTAATACGTATTCTACAAATCTTCT 2574205 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || ||| ||| Sbjct 2574204 GCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGCTGTTT 2574145 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || || ||||||| | Sbjct 2574144 GTCTATGCCTGTGTTTTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTAC 2574085 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 2574084 TTCTTTA----TAAACAGGCATTTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 2574029 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 2574028 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 2573969 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || || ||||| | | ||||| | || |||| Sbjct 2573968 TCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCT 2573909 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || || ||||| || || || || || ||||| ||| ||| | ||||||||| | Sbjct 2573908 GCACCCGGCTCCAGGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 2573849 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || || | || | || || ||| | | Sbjct 2573848 CAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 2573792 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 2573791 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 2573732 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || ||||| || || || || || || || || | Sbjct 2573731 TCTCAATTTTGTGATAAACCACTATGGAATAAGCAATTGGAAATTCTGCTTCTTCATTGC 2573672 Query 162989 TGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGT 163048 |||||| | | ||| ||| || | | | | || | |||||||| | ||||||| Sbjct 2573671 TGAGAGGCTCCATAATGTATTTTCTGGTCTTGGTGAAGGAGGCACAGTCTGCTGTCATGT 2573612 Query 163049 TAA 163051 ||| Sbjct 2573611 TAA 2573609 >seq707 Length=2308111 Score = 120 bits (132), Expect = 4e-22 Identities = 258/380 (68%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGC--ACCATCTCTAGATTGGTCTTAAGGG 162667 ||||| || |||| || |||||||| | ||| || ||||| |||||||| | || Sbjct 256225 CTGTTCCGGCCCCGCAGCGCCTTCAG--GGCGCTGACTATCTCAGCGTTGGTCTTGATGG 256168 Query 162668 GAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGA 162726 | || |||||||||||| || | | ||| | ||| | | | || | | ||| Sbjct 256167 GGAAATCGGTGCCGCAGGTGTTGAGGAGATAGTGCCATGGCATGGGGC-TCTGCAACAGG 256109 Query 162727 TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCC 162786 ||||| | ||||| || || ||||| | || ||| || || || || || | ||| Sbjct 256108 TCCTGCATGCAGTTGAGGTCTGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCC 256049 Query 162787 AACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAG 162846 | | | || ||||||| |||| ||| || | || || || ||||||| | Sbjct 256048 AGGCGGCTAGCCACAAAGATATTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCCTGG 255989 Query 162847 AACAT---CGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 || || |||| | ||||| || ||||| | |||||| | ||||| |||| |||| Sbjct 255988 AAGATAGCCGGGGAC---TTCCTGTCAACGTGGATGCAGTAGACGTTCTGGGGGGTGTAG 255932 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 | || |||||| | | |||||||||||| || || | ||| | || || || || || Sbjct 255931 AGGGACCTCAGGAGCCGCTCGAACATCTCGATGTTGTTGTGGATGACCATGGAGTAGGCA 255872 Query 162964 ATGGGGAACTCAGCCTCCTC 162983 ||||||||||| |||||||| Sbjct 255871 ATGGGGAACTCTGCCTCCTC 255852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578232997700800