Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq20 109 4e-19 seq44 95.1 8e-15 >seq20 Length=4226088 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| |||| || | ||||| ||| || ||| ||| ||||| |||||||| || Sbjct 1306971 GTTACCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTC 1306912 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 ||| || ||||| |||| |||| || || || ||||| ||||| | ||||||||| | Sbjct 1306911 GGAAAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGG 1306852 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697 ||| | || || ||||| || || || | ||| ||| |||||| || | | Sbjct 1306851 CGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTGGGCT 1306793 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| || || || || | || || |||||||||||||| Sbjct 1306792 CAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1306741 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 1306511 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1306452 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| ||||| | ||||||||| |||| Sbjct 1306451 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGA 1306392 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| ||| |||||| || | || || Sbjct 1306391 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTGGGCTCAAC 1306333 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 1306332 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1306285 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| ||| || ||| ||| || || |||||||| ||||| Sbjct 1306739 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1306680 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| ||||| | ||||||||| |||| Sbjct 1306679 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGA 1306620 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| ||| |||||| || | || || Sbjct 1306619 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTGGGCTCAAC 1306561 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 1306560 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1306513 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| ||| |||||| ||| || || |||||||| || || Sbjct 1306283 CCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1306224 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| |||| | ||||||||| | || Sbjct 1306223 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 1306164 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | ||| ||| |||||| || | || || Sbjct 1306163 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATTCTCAATGGTGTCACTGGGCTCAAC 1306105 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 1306104 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1306057 >seq44 Length=2740361 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| ||||| || || || |||||||| ||||| Sbjct 712134 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 712193 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 712194 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 712253 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 712254 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCGAC 712312 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || ||||| || | || || ||||||||||||||| Sbjct 712313 CTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATA 712361 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| || ||| || || || |||||||| || || Sbjct 712590 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 712649 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || || || |||| | ||||||||| | || Sbjct 712650 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 712709 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | |||||| ||||| || ||| ||||| | | ||| |||||| || | || || Sbjct 712710 ATACCTTCCTTGTCCTGGATCTTCGCTTTCA-CGTTCTCAATGGTGTCACTGGGCTCAAC 712768 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || | || || |||||||||||||| Sbjct 712769 CTCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 712816 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| || | ||| | ||| || ||| || || || ||||||||||| || Sbjct 712361 ACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGA 712420 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||| || || || || || |||| | ||||||||| | || Sbjct 712421 GAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGG 712480 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || || | |||| || | |||||| || | || | Sbjct 712481 AATGCCTTCCTTGTCCTGGATCTT-TGCCTTCACATTCTCAATGGTGTCACTGGGCTCGA 712539 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || || || || || ||||||||||| Sbjct 712540 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 712588 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| || ||| || || || |||||||| ||||| Sbjct 712818 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 712877 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || || || |||| | ||||||||| | || Sbjct 712878 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 712937 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 712938 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCGAC 712996 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || || || || || ||||||||||| Sbjct 712997 CTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 713044 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | ||| || ||| || || || |||||||| || || Sbjct 713046 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 713105 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || || || |||| | ||||||||| | || Sbjct 713106 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 713165 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||| || | || || Sbjct 713166 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCA-CATTCTCAATGGTGTCACTGGGCTCGAC 713224 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || ||||||||||||||||| Sbjct 713225 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 713272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328593740660160