Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20auritus_20[genbank_20GCA_5F002173455.1_202017-06-06] 27,523 sequences; 1,246,050,644 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq490 111 2e-19 seq1171 98.7 1e-15 seq120 89.7 7e-13 >seq490 Length=1639929 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 130496 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 130555 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 130556 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGC 130614 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || |||||||| || ||||| || |||||| Sbjct 129215 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 129274 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| || ||||| ||||| |||| || || || Sbjct 129275 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 129324 >seq1171 Length=398088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | ||| Sbjct 364524 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 364583 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || || || ||||| || ||||||||||||||||||||||| || Sbjct 364584 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 364627 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| ||||||||| || | || || || || || || | Sbjct 362218 TCCACCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 362277 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || |||||||||||||| ||||| || || ||||| || | || || | Sbjct 362278 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 362337 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 362338 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 362388 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||| || || || || || || || || || ||||| ||||||| || |||||| Sbjct 372509 GTGCCTGCGTTGAACAAGGTGGGGGAGGCGTGGGTGAACCACCTTTCAGACAGAAGATTG 372568 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || ||| || || |||| ||| | ||||||| Sbjct 372569 TAAGTTTCAATTGCAGCATCGATGTCATTTTTATGGATCCCCACCGATACCCTCATCAAC 372628 Query 78519 ATATGCTGAGG 78529 |||||||| || Sbjct 372629 ATATGCTGTGG 372639 >seq120 Length=4789148 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 1818815 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 1818874 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 1818875 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 1818933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694429807882720