Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq6632 120 4e-22
seq16573 114 2e-20
seq9972 93.3 5e-14
>seq6632
Length=32526
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 9694 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9635
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||||| || || ||||| || |||||||||||||||||||| ||||| ||||| |
Sbjct 9634 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 9575
Query 24277 CAATAAGTCTTTCTCC 24292
| | || | ||||||
Sbjct 9574 CTACAACACGTTCTCC 9559
>seq16573
Length=30794
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 23956 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 24015
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 24016 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 24075
Query 24277 CAATAAGTCTTTCTCC 24292
||| | ||| || ||
Sbjct 24076 CAACCACTCTCTCACC 24091
>seq9972
Length=29549
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| || || || ||||| || || |||||| || | || ||||| || ||||| |
Sbjct 18652 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 18593
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
| | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || |
Sbjct 18592 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 18533
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045
| || | || ||||| | || ||||| | | |||| | || || ||||
Sbjct 18532 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 18482
Score = 89.7 bits (98), Expect = 6e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447
||||||| ||||| ||||||| || || || |||||||| || || || || |||||||
Sbjct 14845 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 14786
Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507
||||||| || || || || | || || | || || || |||| ||||| || |
Sbjct 14785 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTTTCAAAGGGGT 14726
Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
| | | | || || |||||||| | || || |||||||| || || || | ||| |
Sbjct 14725 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 14666
Query 53568 TCTTATTAGAGATTTCAGC 53586
| || ||| ||||||
Sbjct 14665 GTCTGTTGGAGCGTTCAGC 14647
Score = 89.7 bits (98), Expect = 6e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||| ||||| ||||| || | ||||| || ||||| || ||||||||||| || || |
Sbjct 16342 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 16283
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
|| || ||||| ||||| || |||||||| || ||||| ||||| || | | | |
Sbjct 16282 GGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 16223
Query 53269 ACTATTTCTAAGACCGTAT 53287
|| ||||| | |||||||
Sbjct 16222 GCTGTTTCTGACACCGTAT 16204
Score = 86.0 bits (94), Expect = 7e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088
||||| ||||| ||||| ||||||||||| || || | || || ||||||| || ||
Sbjct 10620 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 10561
Query 54089 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147
|| || ||||| || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 10560 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 10502
Query 54148 TTCCAAGTATATGG 54161
|||| ||| ||||
Sbjct 10501 CTCCAGGTAGATGG 10488
Score = 84.2 bits (92), Expect = 3e-11
Identities = 118/166 (71%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
||||||||| ||| || ||||||||||| | ||| || || || || || || || ||||
Sbjct 4717 CACTAAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGAA 4658
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
| || || || || |||| || || || || || |||| || | ||| || ||||
Sbjct 4657 TAGCGTAGTCGGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGCGTATCCA 4598
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| ||||| || || ||| | || | || || || || |||||
Sbjct 4597 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 4552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591744774246720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |