Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq534 150 2e-31 seq16560 105 8e-18 >seq534 Length=660954 Score = 150 bits (166), Expect = 2e-31 Identities = 187/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| | |||||||||||| || || |||||| ||| ||| Sbjct 552574 GAACTTCTCAAAGTTCCAGGAGATGTCGTTGCGGCAGACGGGGGACCAGATGATGTACTG 552633 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| ||||| | ||||||| || ||||| |||||| ||||| Sbjct 552634 TGGGTTGGTCATGAGCGAGGAGGGGTCGTCGTGCGGGAAAGGCAGCGCCTCTTTCAGGAA 552693 Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 || ||| || || || || | ||||| ||||||||||||||||| | || || | Sbjct 552694 GGTGAAAAGGGGGTGCGCGTTCTTCCCGTTCACCTCGCACTTCTCGAACATGATGAAATC 552753 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 |||| | | ||||| |||||||| ||||||| ||| ||| ||| |||||| | || Sbjct 552754 GGGCTTGTACCCGTTGCCAGGACGAACGTGCTCCAGCGAAAGCAGGATCTCCTCGTTTGT 552813 Query 83383 GGCGTTTTCCTGGTGA 83398 ||| ||||||||| || Sbjct 552814 GGCATTTTCCTGGGGA 552829 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| |||||||| || || ||||| ||||| || ||||||||| | || || Sbjct 552960 CCTGGTGCCCGAACTGATTGCAGGGGAAGCCAAGGACCCGCAGCCCCCGGGGGCCGTAGC 553019 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||| | ||| | | || ||| || | |||||||| ||||| | Sbjct 553020 GCCGCTGCAGCTCGTTGAGCTGCTGGAAGTCGCGGGTGGTTGTGCCTCAGAGCGACGCCA 553079 Query 83511 CGTT 83514 |||| Sbjct 553080 CGTT 553083 >seq16560 Length=21448 Score = 105 bits (116), Expect = 8e-18 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 4123 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 4180 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| || || |||| |||||| ||||||||||||||| Sbjct 4181 GCGGGCT-TGCAGCTGGTTGAGCTGGGTATAATCCCTCACCGTGGTACCTCAGAGGGACG 4239 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| ||||| | || |||||||| || Sbjct 4240 CCACGTTCTCAATGAGGACCACGCGGCCCCGGAA 4273 Score = 104 bits (114), Expect = 3e-17 Identities = 218/312 (70%), Gaps = 16/312 (5%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||| ||| || |||||| ||||||| || || ||| || |||| ||||||| | Sbjct 3636 GAGGAGGCGCTGGATGTCAGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGC 3693 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | |||||||| |||||||||||||||||||| | |||| | Sbjct 3694 CGGAAAGGTTCCCCTTCGGGACCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAG 3753 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTC 83232 || | ||| || ||||| | || |||| ||| || || |||| | ||||| Sbjct 3754 CGCCGCACGGGGCTCCAGGTGAGGAAGCGGGGCTCGGCCATCAGATGTGC-CGCCTCGTC 3812 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 ||| | |||||| |||| || ||| |||| |||| || || || ||| || Sbjct 3813 AGCCGGCTCAGGCAGGTGAGCCT-TC--AGGTAGGCAAAGACGGGGTGGGTGTCCT-GC- 3867 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 ||||| |||| |||||||| ||||| | ||||| ||||||||||| ||| || || Sbjct 3868 CCGTTCACCTGGCACTTCTGAAAGAGGGTGAAGTTGGGCTCGAAGCCACCCCCCGGCCGC 3927 Query 83348 ACGTGCTTCAGG 83359 || ||||||||| Sbjct 3928 ACATGCTTCAGG 3939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606769780614560