Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq21304 136 3e-27
seq12144 132 4e-26
seq109229 104 2e-17
seq189893 82.4 6e-11
>seq21304
Length=31350
Score = 136 bits (150), Expect = 3e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||||| |||||||||||| || ||||| ||||| | |||||| | | ||
Sbjct 371 AGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 430
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || |||||||| || ||| | ||||||||||||
Sbjct 431 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 490
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| || || | | | || |||| |||||| |||| ||| ||||||
Sbjct 491 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 550
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
||||| || | || || ||||| || ||||||||
Sbjct 551 TTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 585
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||||| |||||||||||| || ||||| ||||| | ||||| | ||||
Sbjct 143 AGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTCT 202
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || |||||||| || || | ||| ||||||||
Sbjct 203 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCC 262
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| || || | | | || |||| |||||| |||| ||| ||||||
Sbjct 263 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 322
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || || ||||| || |||||
Sbjct 323 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 354
>seq12144
Length=38566
Score = 132 bits (146), Expect = 4e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | ||||| ||||| || ||||| ||||| | |||||| || | ||
Sbjct 438 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 379
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || |||||||| || ||| | ||||||||||||
Sbjct 378 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 319
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||||| ||||| | | | || |||| |||||| || | ||| ||||||
Sbjct 318 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 259
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181
|||||||| | || || ||||| || ||||| |||||
Sbjct 258 TTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTTGAA 221
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | ||||| ||||| || ||||| ||||| | |||||| || | ||
Sbjct 666 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 607
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || |||||||| || ||| | ||||||||||||
Sbjct 606 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 547
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||||| ||||| | | | || |||| |||||| || | ||| ||||||
Sbjct 546 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 487
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| ||||| || || || ||||| || |||||
Sbjct 486 TTACCGGTCAAGGTCTTCACAAAGATCTGCAT 455
Score = 122 bits (134), Expect = 7e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | ||| || ||||| || ||||| ||||| | |||||| || | ||
Sbjct 1350 AGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 1291
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || |||||||| || ||| | ||||||||||||
Sbjct 1290 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 1231
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||||| ||||| | | | || |||| |||||| || | ||| ||||||
Sbjct 1230 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 1171
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| ||||| | || || ||||| || |||||
Sbjct 1170 TTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | ||||| ||||| || ||||| ||||| | |||||| || | ||
Sbjct 894 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 835
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || |||||||| || ||| | |||||||||||
Sbjct 834 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCC 775
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| |||||| | | | || |||| |||||| || | ||| |||||
Sbjct 774 TGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTT 715
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || || ||||| || |||||
Sbjct 714 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 683
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | ||||| ||||| || ||||| || || | ||||| | | ||
Sbjct 1122 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCT 1063
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| || | || || |||||||| || ||| | ||||||||||||
Sbjct 1062 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 1003
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||||| ||||| | | | || |||| |||||| || | ||| ||||||
Sbjct 1002 TGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 943
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||| || || || || || || |||||
Sbjct 942 TTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 911
>seq109229
Length=213
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047
|| || ||||| ||||| | |||||| || | |||||||||||||||||||| | ||
Sbjct 213 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAATATC 154
Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107
|| ||||||||||| || | |||||||||||| |||||| || || | ||
Sbjct 153 AGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCG 94
Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167
| || |||| |||||| || | || ||||||||||| || | || || || ||
Sbjct 93 ATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 34
Query 21168 ATTTGCATTTTG 21179
|| ||||| |||
Sbjct 33 ATCTGCATGTTG 22
>seq189893
Length=523
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||||| ||| | |||||||||||||||||||| ||||| | |
Sbjct 267 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 326
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || || | || |||||||| || || ||| | || || |||||||| || ||
Sbjct 327 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 386
Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091
| |||||||| || ||||||
Sbjct 387 ATTCCTTCCTTATCCTGGATCTT 409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420888415208624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |