Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq189893 118 1e-21 seq12144 113 5e-20 seq14137 100 3e-16 seq1073 100 3e-16 seq21304 98.7 1e-15 seq10564 98.7 1e-15 seq3207 98.7 1e-15 seq17866 95.1 1e-14 >seq189893 Length=523 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||| ||| | ||| |||||||||||| ||||| |||| || |||||| | || Sbjct 281 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 340 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||||||||| || || || | |||||| || | || | | ||||| || Sbjct 341 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 400 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || || | | | | ||||| | ||| || |||| ||||||||| Sbjct 401 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 460 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || ||||| |||||||| ||||| Sbjct 461 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493 >seq12144 Length=38566 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | ||| | ||| ||||| || || ||||| |||| ||| || || | Sbjct 897 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 838 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| |||||||| || || | |||||| |||| || | | |||||| Sbjct 837 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTG 778 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || ||| | || | | ||||| || | || || |||| |||||| Sbjct 777 TCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 718 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || || ||||| |||||||| ||||| Sbjct 717 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 683 Score = 105 bits (116), Expect = 8e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | ||| | ||| ||||| || || ||||| || | ||| || || | Sbjct 441 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 382 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || | |||||| |||| || | || |||||| Sbjct 381 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 322 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| ||| || | || | | ||||| || | || || |||| |||||| Sbjct 321 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 262 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || |||||||||||||| ||||| || Sbjct 261 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTT 224 >seq14137 Length=2336 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1085 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1026 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1025 ATACTAACGAGGA 1013 >seq1073 Length=1229293 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 410134 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 410075 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 410074 ATACTAACGAGGA 410062 >seq21304 Length=31350 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4999 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5058 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5059 TACTAACGAGGA 5070 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5695 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5754 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5755 TACTAACGAGGA 5766 >seq10564 Length=64847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14733 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14674 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 14673 TACTAACGAGGA 14662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9747 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 9806 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9807 TACTAACGAGGA 9818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 15554 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 15495 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 15494 TACTAACGAGGA 15483 >seq3207 Length=76088 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27618 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27559 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 27558 TACTAACGAGGA 27547 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27773 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27832 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 27833 TACTAACGAGGA 27844 >seq17866 Length=76186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 49436 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 49495 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 49496 TACTAACGAGGA 49507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569913704709920