Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq1066 259 5e-64 >seq1066 Length=3223403 Score = 259 bits (286), Expect = 5e-64 Identities = 308/421 (73%), Gaps = 1/421 (0%) Strand=Plus/Minus Query 125093 CCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCA 125152 ||||| || ||| ||||||||||||||| || || |||||||||| |||| ||||||| Sbjct 524893 CCCGTCCCC-GCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCCCCGCTCCTCGGCCA 524835 Query 125153 GGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACA 125212 |||| |||||||||||| || ||| ||||| ||||| || | ||||| ||| || Sbjct 524834 GGTAGGCGGCCAGCGCTTCGACCAGGCGGCGCGGCCCGTCGCCGCAGCCCCGCTCGGCCA 524775 Query 125213 GCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGC 125272 |||| | ||||||| |||| ||| ||| | |||||| || |||||||||| || Sbjct 524774 GCGCGGCGGCCAGCGTGCCGGCGAAGACCACCAGCGCCAGCAGCCGGCCCCAGTTGAGGC 524715 Query 125273 CGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGC 125332 ||| ||| | || || | | |||| | |||| || | ||| || ||| Sbjct 524714 CGCCGTCGGCCTCCAGTTGCGCCGCCACCCGCCCCAGCAGCGCCGCCGCCTCCCGCGGCT 524655 Query 125333 CGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGG 125392 || | | ||| | ||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 524654 CGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCTCGCCGCTCCAGCTCGG 524595 Query 125393 CCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAGC 125452 ||||||| ||||| || || || || ||| |||| | ||| | || Sbjct 524594 CCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCCCGGCGCCGCCACCGC 524535 Query 125453 AGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGG 125512 ||||||||||| ||||||||||||| |||||| || |||||||| ||| | | ||||| Sbjct 524534 GATGCTGGAAGTAGTCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGCGAGCCCGGCATGG 524475 Query 125513 C 125513 | Sbjct 524474 C 524474 Score = 250 bits (276), Expect = 3e-61 Identities = 306/421 (73%), Gaps = 1/421 (0%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| ||||||||||||| ||||||||||| Sbjct 524474 GCCATGCCGGGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGACTACTTCCAGCAT 524533 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || | ||| | |||| ||| || || || |||||||| | ||||||||| || Sbjct 524534 CGCGGTGGCGGCGCCGGGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCG 524593 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 |||||||||||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 524594 GCCGAGCTGGAGCGGCGAGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 524653 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || |||| | |||| | | || || | ||| || Sbjct 524654 GAGCCGCGGGAGGCGGCGGCGCTGCTGGGGCGGGTGGCGGCGCAACTGGAGGCCGACGGC 524713 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | ||| ||| |||| ||||||| | ||| Sbjct 524714 GGCCTCAACTGGGGCCGGCTGCTGGCGCTGGTGGTCTTCGCCGGCACGCTGGCCGCCGCG 524773 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| ||||| | || ||||| ||||| ||| || |||||||||||| ||| Sbjct 524774 CTGGCCGAGCGGGGCTGCGGCGACGGGCCGCGCCGCCTGGTCGAAGCGCTGGCCGCCTAC 524833 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| |||||||||| || || ||||||||||||||| ||| || |||| Sbjct 524834 CTGGCCGAGGAGCGGGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGC-GGGGACGG 524892 Query 157503 G 157503 | Sbjct 524893 G 524893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507488646412800