Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq16573 114 1e-20
seq114383 93.3 4e-14
seq6632 89.7 5e-13
>seq16573
Length=30794
Score = 114 bits (126), Expect = 1e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947
||||||| ||| |||| ||| ||||| || || | | || |||||| | | ||
Sbjct 17562 AAAAATCTGCATCCAGAGTAAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 17621
Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007
||||||| ||| | ||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 17622 GATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAAAGAAATATTCTCCA 17681
Query 16008 TAAAATCAAAAGGATTTTTTG 16028
| |||||||||||||||| ||
Sbjct 17682 TGAAATCAAAAGGATTTTCTG 17702
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || || || || || || ||||| || || | || ||
Sbjct 23958 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 24017
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |||
Sbjct 24018 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 24077
Query 16379 ACCAATCGCTCACC 16392
|||| || ||||||
Sbjct 24078 ACCACTCTCTCACC 24091
>seq114383
Length=219
Score = 93.3 bits (102), Expect = 4e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984
||| ||||| ||| ||| | ||||| || | |||| ||| |||||||| ||||| ||
Sbjct 112 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 53
Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025
|||||||| ||| ||||||||||| || ||||| |||||||
Sbjct 52 TCCTTCTAGTGAGATATTTTCCATGAAGTCAAACGGATTTT 12
>seq6632
Length=32526
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || ||||| || | || || ||||| || || || ||||||| ||||| ||| ||
Sbjct 9692 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9633
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| ||
Sbjct 9632 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGCT 9573
Query 16379 AC 16380
||
Sbjct 9572 AC 9571
Score = 82.4 bits (90), Expect = 7e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549
||||| |||| ||| || || || || || | ||| |||||||||||||| |||||
Sbjct 7599 TCTTTAGAATCTTTAATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTT 7540
Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
||||| || ||||| || ||||| || || | ||| || | |||||||||||
Sbjct 7539 TCCATGGCAATCTGGAAGCCATAGAAACACCGAGCCTCTGTGATTTGTACTTC 7487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460972043170400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |