Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq16573 114 1e-20 seq114383 93.3 4e-14 seq6632 89.7 5e-13 >seq16573 Length=30794 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| ||| ||||| || || | | || |||||| | | || Sbjct 17562 AAAAATCTGCATCCAGAGTAAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 17621 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 17622 GATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAAAGAAATATTCTCCA 17681 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 17682 TGAAATCAAAAGGATTTTCTG 17702 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || || | || || Sbjct 23958 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 24017 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 24018 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 24077 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 24078 ACCACTCTCTCACC 24091 >seq114383 Length=219 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||| ||||| ||| ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 112 ATTCGACATGACTCCCATCCTCTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTT 53 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||||||| ||| ||||||||||| || ||||| ||||||| Sbjct 52 TCCTTCTAGTGAGATATTTTCCATGAAGTCAAACGGATTTT 12 >seq6632 Length=32526 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || ||||| || || || ||||||| ||||| ||| || Sbjct 9692 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9633 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 9632 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGCT 9573 Query 16379 AC 16380 || Sbjct 9572 AC 9571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 ||||| |||| ||| || || || || || | ||| |||||||||||||| ||||| Sbjct 7599 TCTTTAGAATCTTTAATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTT 7540 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||| || ||||| || ||||| || || | ||| || | ||||||||||| Sbjct 7539 TCCATGGCAATCTGGAAGCCATAGAAACACCGAGCCTCTGTGATTTGTACTTC 7487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460972043170400