Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2341 381 4e-101 seq1256 104 2e-17 >seq2341 Length=450988 Score = 381 bits (422), Expect = 4e-101 Identities = 685/998 (69%), Gaps = 6/998 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687 ||||| ||||| || | ||||| | ||||||||| || ||||||| ||||| Sbjct 176463 TACCTGAACATGACGAAGGACTGCAGGAGCTTCAAGGAGACGCGGCAGTTCATCGAGTTC 176522 Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 |||||||| | || ||| ||| ||||||||||||||||| ||||| |||| | || Sbjct 176523 CCACTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAACAAC 176582 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | || || ||||| ||| | || | || |||| |||||| | ||||| || Sbjct 176583 ATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGCATC 176642 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||| || ||||||||| | | ||| | ||||| || |||||| | ||||| Sbjct 176643 CACGTTGACAGGAAGTCCCCGGCTATCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 176702 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||||||||| |||| |||| || ||| |||||| ||||||||||||||| | Sbjct 176703 TTCCCCAATATCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 176762 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987 |||| || ||||| ||||| ||| | ||| || | |||||| | |||||||| | || Sbjct 176763 CTGCAGGCAGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCATGGCACTAT 176822 Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047 | || || || ||||| || || |||||||| |||||||| || ||||| ||| ||| Sbjct 176823 CTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAGTCAGCGCC 176882 Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107 || ||| | || ||| |||||| |||||||| ||| || || || ||||| Sbjct 176883 CTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCTCGGACTCCAAGCGG 176942 Query 108108 aaTCGCTGGAAATACCGC--TATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TG 108164 |||||| | || | | || | | ||| || ||| |||| | | | Sbjct 176943 GCACGCTGGCAGTATCACCACATAGTGGGGCAGTTCATCT---CCCGGACAGCCACAGAG 176999 Query 108165 AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224 || || || || | || | ||||||||||| || ||||| || | | | | | Sbjct 177000 AAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAATGCGTACATCGCAGTCACA 177059 Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTC 108284 || ||||| || || | |||| || ||||| | | | | | |||| |||| | Sbjct 177060 CGGGCCTTCGTGCAGTACATCTTTGAGAACCCCACAACACTGCAGTTCTTTGAGTGGGCC 177119 Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344 || |||||||| ||||| ||||| ||| ||||||||||||| | || || | || Sbjct 177120 AAGGACACCTACAGCCCTGACGAGCACATCTGGGCCACCCTCAACCGCATGCCTGGCGTG 177179 Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404 || ||||| | || | ||||| || |||| || |||| ||| | || | Sbjct 177180 CCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTCGGATATGAACGCCCTACCCCGC 177239 Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464 || |||||||||||||||| ||||| || ||||| ||| ||||| || | |||||| Sbjct 177240 CTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAAGGGCGCGCCCTACCCGCCCTGC 177299 Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTC 108524 | || || | | | || ||||||| ||||||| || ||| || |||||| ||| Sbjct 177300 ACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTC 177359 Query 108525 CAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAG 108584 ||| | || ||||||||||| |||||||| ||||| |||||| || || | | | | Sbjct 177360 CAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCGTGGTGGACGACGCCGCCATCCTG 177419 Query 108585 TGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 ||| | || |||||||| || || | |||| |||| || Sbjct 177420 TGCCTGGAGGAGTACCTGCGCCACAGGGCCCTCTACGG 177457 >seq1256 Length=1756643 Score = 104 bits (114), Expect = 2e-17 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| ||||| || || ||||| || ||| || | ||||| || ||||| | Sbjct 254853 TTGAGTGGGCAAAAGATACTTACAGCCCAGATGAATACTTATGGGCAACAATTCAGAGAA 254912 Query 108334 CTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | || | |||| || |||||| | | || |||||| Sbjct 254913 -TCCCTGAAGTCCCAGGTGCAGTGTCTTCTAGTGAC---AAGTATGATGTTTCTGACATG 254968 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || || || || ||| || Sbjct 254969 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAGGGTGCA 255028 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 ||||| |||| ||| |||| | ||| | | |||| ||| |||| || ||| Sbjct 255029 CCTTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 255088 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 255089 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 255136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347138211076536