Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq2341 381 4e-101
seq1256 104 2e-17
>seq2341
Length=450988
Score = 381 bits (422), Expect = 4e-101
Identities = 685/998 (69%), Gaps = 6/998 (1%)
Strand=Plus/Plus
Query 107628 TACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTC 107687
||||| ||||| || | ||||| | ||||||||| || ||||||| |||||
Sbjct 176463 TACCTGAACATGACGAAGGACTGCAGGAGCTTCAAGGAGACGCGGCAGTTCATCGAGTTC 176522
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|||||||| | || ||| ||| ||||||||||||||||| ||||| |||| | ||
Sbjct 176523 CCACTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAACAAC 176582
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
|| || | || || ||||| ||| | || | || |||| |||||| | ||||| ||
Sbjct 176583 ATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGCATC 176642
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
||||| || ||||||||| | | ||| | ||||| || |||||| | |||||
Sbjct 176643 CACGTTGACAGGAAGTCCCCGGCTATCTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 176702
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||||||||| |||| |||| || ||| |||||| ||||||||||||||| |
Sbjct 176703 TTCCCCAATATCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 176762
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTAC 107987
|||| || ||||| ||||| ||| | ||| || | |||||| | |||||||| | ||
Sbjct 176763 CTGCAGGCAGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCATGGCACTAT 176822
Query 107988 TTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCC 108047
| || || || ||||| || || |||||||| |||||||| || ||||| ||| |||
Sbjct 176823 CTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAGTCAGCGCC 176882
Query 108048 CTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaa 108107
|| ||| | || ||| |||||| |||||||| ||| || || || |||||
Sbjct 176883 CTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCTCGGACTCCAAGCGG 176942
Query 108108 aaTCGCTGGAAATACCGC--TATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TG 108164
|||||| | || | | || | | ||| || ||| |||| | | |
Sbjct 176943 GCACGCTGGCAGTATCACCACATAGTGGGGCAGTTCATCT---CCCGGACAGCCACAGAG 176999
Query 108165 AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCT 108224
|| || || || | || | ||||||||||| || ||||| || | | | | |
Sbjct 177000 AAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAATGCGTACATCGCAGTCACA 177059
Query 108225 CGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTC 108284
|| ||||| || || | |||| || ||||| | | | | | |||| |||| |
Sbjct 177060 CGGGCCTTCGTGCAGTACATCTTTGAGAACCCCACAACACTGCAGTTCTTTGAGTGGGCC 177119
Query 108285 AAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATG 108344
|| |||||||| ||||| ||||| ||| ||||||||||||| | || || | ||
Sbjct 177120 AAGGACACCTACAGCCCTGACGAGCACATCTGGGCCACCCTCAACCGCATGCCTGGCGTG 177179
Query 108345 CCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGG 108404
|| ||||| | || | ||||| || |||| || |||| ||| | || |
Sbjct 177180 CCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTCGGATATGAACGCCCTACCCCGC 177239
Query 108405 CTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGC 108464
|| |||||||||||||||| ||||| || ||||| ||| ||||| || | ||||||
Sbjct 177240 CTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAAGGGCGCGCCCTACCCGCCCTGC 177299
Query 108465 TCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTC 108524
| || || | | | || ||||||| ||||||| || ||| || |||||| |||
Sbjct 177300 ACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTC 177359
Query 108525 CAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAG 108584
||| | || ||||||||||| |||||||| ||||| |||||| || || | | | |
Sbjct 177360 CAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCGTGGTGGACGACGCCGCCATCCTG 177419
Query 108585 TGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622
||| | || |||||||| || || | |||| |||| ||
Sbjct 177420 TGCCTGGAGGAGTACCTGCGCCACAGGGCCCTCTACGG 177457
>seq1256
Length=1756643
Score = 104 bits (114), Expect = 2e-17
Identities = 198/288 (69%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333
|||| |||| ||||| || || ||||| || ||| || | ||||| || ||||| |
Sbjct 254853 TTGAGTGGGCAAAAGATACTTACAGCCCAGATGAATACTTATGGGCAACAATTCAGAGAA 254912
Query 108334 CTCCGTGGA-TGCCTGGCTCTGT---TCCTAGCCACCCCAAGTATCACATCTCAGACATG 108389
||| || | | || || | || | |||| || |||||| | | || ||||||
Sbjct 254913 -TCCCTGAAGTCCCAGGTGCAGTGTCTTCTAGTGAC---AAGTATGATGTTTCTGACATG 254968
Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449
| ||| | |||||| | ||||||||||||||| || || || || || ||| ||
Sbjct 254969 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAGGGTGCA 255028
Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509
||||| |||| ||| |||| | ||| | | |||| ||| |||| || |||
Sbjct 255029 CCTTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 255088
Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||| ||||||| || | ||||| ||| |||| || || |||||||||
Sbjct 255089 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 255136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347138211076536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |