Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq16573 123 3e-23
seq9972 93.3 5e-14
seq114383 86.0 8e-12
seq6632 86.0 8e-12
seq19694 84.2 3e-11
>seq16573
Length=30794
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| |
Sbjct 23956 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 24015
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 24016 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 24075
Query 33724 CAATAAGTCTCTCTCC 33739
||| | |||||| ||
Sbjct 24076 CAACCACTCTCTCACC 24091
>seq9972
Length=29549
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172
|||| || || || ||||| || || |||||| || | || ||||| || ||||| |
Sbjct 18652 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 18593
Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232
| | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || |
Sbjct 18592 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 18533
Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283
| || | || ||||| | || ||||| | | |||| | || || ||||
Sbjct 18532 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 18482
Score = 84.2 bits (92), Expect = 3e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326
||||| ||||| ||||| ||||||||||| || || | || || ||||| | || ||
Sbjct 10620 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 10561
Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385
|| || ||||| || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 10560 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 10502
Query 63386 TTCCAAGTATATGGC 63400
|||| ||| |||||
Sbjct 10501 CTCCAGGTAGATGGC 10487
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
||||||| || || ||||||| || || || |||| ||| || || || || |||||||
Sbjct 14845 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 14786
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||| || ||||| || | || || | || || || ||||| ||||| || |
Sbjct 14785 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTTTCAAAGGGGT 14726
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | | || || ||||| || | || || |||||||| || || || | ||| |
Sbjct 14725 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 14666
Query 62806 TCTTATTAGAGATTTCAGC 62824
| || ||| ||||||
Sbjct 14665 GTCTGTTGGAGCGTTCAGC 14647
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446
||| || || ||||| || | ||||| || ||||| || ||||||||||| || || |
Sbjct 16342 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 16283
Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506
|| || ||||| ||||| || |||||||| || ||||| ||||| || | | | |
Sbjct 16282 GGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 16223
Query 62507 ACTATTTCTAAGACCGTAT 62525
|| ||||| | |||||||
Sbjct 16222 GCTGTTTCTGACACCGTAT 16204
>seq114383
Length=219
Score = 86.0 bits (94), Expect = 8e-12
Identities = 103/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 33292
||| |||||| |||| || | |||| || ||| || | ||||| |||||||| |
Sbjct 151 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 92
Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352
|| || || || || || || || || || || || |||||||| | ||| ||||||||
Sbjct 91 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 32
Query 33353 CATGAAATCAAACGGATT 33370
|||||| |||||||||||
Sbjct 31 CATGAAGTCAAACGGATT 14
>seq6632
Length=32526
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335
||||| |||||||| | || |||||||| || ||||| || || ||||| || || |||
Sbjct 10975 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 10916
Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370
|||| || || ||||||||||| ||||| |||||
Sbjct 10915 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 10881
>seq19694
Length=2643
Score = 84.2 bits (92), Expect = 3e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553
||||||||||| | |||||| | ||||| || || | |||||||| || |||||||
Sbjct 1933 TTTCTATGATGTGTCTATCGTCTTGCAAGCCTTTATTCTTACTACTGCTGTATTTCTTGG 1992
Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||||| ||| ||| | || || |||||||| ||||| ||| ||| | ||||
Sbjct 1993 ACTGACTGCATATACCTTGCAGTCGAAGAGAGACTTCAGCAAATTTGGAGCAGG 2046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627720590809920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |