Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16573 123 3e-23 seq9972 93.3 5e-14 seq114383 86.0 8e-12 seq6632 86.0 8e-12 seq19694 84.2 3e-11 >seq16573 Length=30794 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 23956 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 24015 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 24016 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 24075 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 24076 CAACCACTCTCTCACC 24091 >seq9972 Length=29549 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| || | || ||||| || ||||| | Sbjct 18652 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 18593 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 18592 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 18533 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 18532 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 18482 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||| ||||||||||| || || | || || ||||| | || || Sbjct 10620 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 10561 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 10560 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 10502 Query 63386 TTCCAAGTATATGGC 63400 |||| ||| ||||| Sbjct 10501 CTCCAGGTAGATGGC 10487 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| || || ||||||| || || || |||| ||| || || || || ||||||| Sbjct 14845 CATATGTTTCGTACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCGT 14786 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| || ||||| || | || || | || || || ||||| ||||| || | Sbjct 14785 AATAAATAGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCAGGGCTTTCAAAGGGGT 14726 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | | || || ||||| || | || || |||||||| || || || | ||| | Sbjct 14725 ACCTCATCAAGATGAAAGCGTCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGGC 14666 Query 62806 TCTTATTAGAGATTTCAGC 62824 | || ||| |||||| Sbjct 14665 GTCTGTTGGAGCGTTCAGC 14647 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || || ||||| || | ||||| || ||||| || ||||||||||| || || | Sbjct 16342 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 16283 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || || ||||| ||||| || |||||||| || ||||| ||||| || | | | | Sbjct 16282 GGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 16223 Query 62507 ACTATTTCTAAGACCGTAT 62525 || ||||| | ||||||| Sbjct 16222 GCTGTTTCTGACACCGTAT 16204 >seq114383 Length=219 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 33292 ||| |||||| |||| || | |||| || ||| || | ||||| |||||||| | Sbjct 151 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 92 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || || || || || || || || || || || || |||||||| | ||| |||||||| Sbjct 91 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 32 Query 33353 CATGAAATCAAACGGATT 33370 |||||| ||||||||||| Sbjct 31 CATGAAGTCAAACGGATT 14 >seq6632 Length=32526 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || ||||| || || ||||| || || ||| Sbjct 10975 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 10916 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 10915 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 10881 >seq19694 Length=2643 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553 ||||||||||| | |||||| | ||||| || || | |||||||| || ||||||| Sbjct 1933 TTTCTATGATGTGTCTATCGTCTTGCAAGCCTTTATTCTTACTACTGCTGTATTTCTTGG 1992 Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||||| ||| ||| | || || |||||||| ||||| ||| ||| | |||| Sbjct 1993 ACTGACTGCATATACCTTGCAGTCGAAGAGAGACTTCAGCAAATTTGGAGCAGG 2046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627720590809920