Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq12144 109 5e-19
seq9972 87.8 2e-12
seq189893 82.4 8e-11
>seq12144
Length=38566
Score = 109 bits (120), Expect = 5e-19
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || ||||| ||||||| | ||||||||||| || |||||||| |||
Sbjct 1065 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 1006
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| ||| || | | || | ||||| ||||||| ||||||| ||| |
Sbjct 1005 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 946
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||||||||| || || ||||| || |||||
Sbjct 945 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 911
Score = 105 bits (116), Expect = 7e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || || || || ||||| || ||| || |||| ||||| ||||| || |||
Sbjct 651 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 592
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| ||||||| | ||||||||||| || |||||||| ||||| ||| ||| ||
Sbjct 591 GCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTC 532
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||||| ||| | ||||| |||||||| ||
Sbjct 531 ACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCGGTCAAGGTC 472
Query 139748 TTTACGAATATTTGCATA 139765
|| || || || ||||||
Sbjct 471 TTCACAAAGATCTGCATA 454
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || || || || ||||| || ||| || |||| ||||| ||||| || ||
Sbjct 423 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 364
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||||||||| || |||||||| ||||| ||| ||| ||
Sbjct 363 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTC 304
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||||||||||| ||
Sbjct 303 ACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 244
Query 139748 TTTACGAATATTTGCAT 139764
||||| || || |||||
Sbjct 243 TTTACAAAGATCTGCAT 227
Score = 100 bits (110), Expect = 3e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||| || || || ||||| || ||| || |||| ||||| ||||| || ||
Sbjct 1335 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1276
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||||||||| || |||||||| ||||| ||| ||| ||
Sbjct 1275 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTC 1216
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| ||||| | ||| | ||||| ||||||| ||
Sbjct 1215 ACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTC 1156
Query 139748 TTTACGAATATTTGCATA 139765
|| || || || ||||||
Sbjct 1155 TTCACAAAGATCTGCATA 1138
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || ||||| ||||||| | ||||||||||| || || ||||| |||
Sbjct 837 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTG 778
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || ||| | | || | ||||| ||||||| ||||| | ||| |
Sbjct 777 TCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 718
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| ||||| |||| || || || || || |||||
Sbjct 717 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 683
>seq9972
Length=29549
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/105 (80%), Gaps = 2/105 (2%)
Strand=Plus/Minus
Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACT-TTGATTGCTTTT 153742
|||||||| | ||||| |||||||||||| || | || ||| | || |||||||| ||
Sbjct 11945 ACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTCCCCAAGTTCTGCTGATTGCTCTT 11887
Query 153743 GCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787
||||| |||| ||| ||||| |||||||| || |||||||| ||
Sbjct 11886 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 11842
>seq189893
Length=523
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| ||||||||||| || || || || | ||||| |||||
Sbjct 291 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCCAGCTGC 350
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
||||||||| ||||||| | |||||||| ||||| || ||||| || || ||| ||
Sbjct 351 TTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 410
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|||| | ||| | ||||| | ||| || ||||| | || | || || || ||
Sbjct 411 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTA 470
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| || || || || || |||||
Sbjct 471 AGGGTCTTCACAAAGATCTGCAT 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494412330108800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |