Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16573 132 7e-26 seq6632 120 4e-22 seq9972 96.9 5e-15 >seq16573 Length=30794 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 23956 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 24015 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 24016 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 24075 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 24076 CAACCACTCTCTCACC 24091 >seq6632 Length=32526 Score = 120 bits (132), Expect = 4e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 9694 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9635 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 9634 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 9575 Query 50102 CAACAA 50107 | |||| Sbjct 9574 CTACAA 9569 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | || |||||||| || ||||| || || ||||| || || ||| Sbjct 10975 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 10916 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||| || || ||||||||||| ||||| ||||| Sbjct 10915 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 10881 >seq9972 Length=29549 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| || | || ||||| || ||||| | Sbjct 18652 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 18593 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || || ||||||||||| || || |||||||| ||||| || | ||| || | Sbjct 18592 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 18533 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 18532 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 18482 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||| ||||||||||| || || | || || ||||||| || ||| Sbjct 10620 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 10561 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || ||||| || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 10560 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 10502 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 10501 CTCCAGGTAGATGGCAAAAGCCCCGGGTC 10473 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | Sbjct 16342 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 16283 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 ||||| ||||| ||||| || |||||||| || || |||||||| || | | | | Sbjct 16282 GGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAG 16223 Query 79179 ACTATTTCTAAGACCGTAT 79197 || ||||| | ||||||| Sbjct 16222 GCTGTTTCTGACACCGTAT 16204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715877288116960