Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq16573 132 6e-26
seq6632 114 2e-20
seq9972 93.3 6e-14
seq114383 89.7 7e-13
>seq16573
Length=30794
Score = 132 bits (146), Expect = 6e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 23956 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 24015
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 24016 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 24075
Query 42207 CAATAAGTCTCTCTCC 42222
||| | |||||| ||
Sbjct 24076 CAACCACTCTCTCACC 24091
>seq6632
Length=32526
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 9694 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9635
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 9634 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 9575
Query 42207 C 42207
|
Sbjct 9574 C 9574
Score = 93.3 bits (102), Expect = 6e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| |||||||| || || || || | |||||| |||||||||||||| || |||
Sbjct 7599 TCTTTAGAATCTTTAATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTT 7540
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| ||||| ||||| || || |||||||| | ||||| || | |||||||||
Sbjct 7539 TCCATGGCAATCTGGAAGCCATAGAAACACCGAGCCTCTGTGATTTGTACTTCT 7486
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | || |||||||| || ||||| || || ||||| ||||| |||
Sbjct 10975 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 10916
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||| || || ||||||||||| ||||| |||||
Sbjct 10915 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 10881
>seq9972
Length=29549
Score = 93.3 bits (102), Expect = 6e-14
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| ||||| ||||||||||| || || | || || ||||||| || |||
Sbjct 10620 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 10561
Query 72082 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140
|| || ||||| || ||||| |||||| || || ||| | | || || ||||||| ||
Sbjct 10560 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 10502
Query 72141 TTCCAAGTATATGGC 72155
|||| ||| |||||
Sbjct 10501 CTCCAGGTAGATGGC 10487
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| || || || ||||| || || |||||| ||| | || || || ||||| || |
Sbjct 18652 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 18593
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
| | ||||| || ||||||||||| || || |||||||| ||||| || | ||| || |
Sbjct 18592 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 18533
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | || ||||| | || ||||| | | |||| | || || ||||
Sbjct 18532 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 18482
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||| ||||| ||||| || | ||||| || ||||| || ||||||||||| || || |
Sbjct 16342 TACCTGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGAT 16283
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249
|| || ||||| ||||| || |||||||| || ||||| ||||| ||
Sbjct 16282 GGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 16235
>seq114383
Length=219
Score = 89.7 bits (98), Expect = 7e-13
Identities = 104/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775
||| |||||| |||| || | |||| || ||| || | ||||| |||||||| |
Sbjct 151 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 92
Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835
|| || || || || || || || || || || ||||||||||| | ||| ||||||||
Sbjct 91 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 32
Query 41836 CATGAAATCAAACGGATT 41853
|||||| |||||||||||
Sbjct 31 CATGAAGTCAAACGGATT 14
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 668904608476640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |