Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq12144 93.3 4e-14 seq9972 93.3 4e-14 >seq12144 Length=38566 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || ||||| || || |||||||| ||| || |||| Sbjct 669 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 610 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 609 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 550 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | || | ||||| |||| || || |||| || | Sbjct 549 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 490 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| |||||||| || || || || || |||||| Sbjct 489 GTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATA 454 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || ||||| || || ||||||||||| | | | | ||| Sbjct 1125 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATC--TGAGAGGGTACGAC 1068 Query 143030 --TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 143087 ||||| || || || ||||| ||||||| | ||||||||||| || |||||||| | Sbjct 1067 CATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCT 1008 Query 143088 TGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCA 143147 |||| || ||| || | | || | ||||| |||| || || |||| || | Sbjct 1007 TGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGA 948 Query 143148 CCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||||||||| || || ||||| || ||||| Sbjct 947 TGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || ||||| || || |||||||| ||| || |||| Sbjct 441 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 382 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 381 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 322 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | || | ||||| |||| || || || | || | Sbjct 321 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 262 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||||| || ||||| || || ||||| Sbjct 261 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 227 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | |||||||| || || |||||||| ||| || |||| Sbjct 1353 CGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 1294 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || || ||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 1293 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 1234 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || ||| || | | || | ||||| |||| || || || | || | Sbjct 1233 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1174 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||||||| || || || || || |||||| Sbjct 1173 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATA 1138 >seq9972 Length=29549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 157164 |||||||| | ||||| |||||||||||| || ||| ||| | || |||||||| || Sbjct 11945 ACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTCCCCAAGTTCTGCTGATTGCTCTT 11887 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 |||||||||| ||| ||||| | ||||||||| |||||||| || | ||| || || Sbjct 11886 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTCTGTCTGAGACTCGAT 11827 Query 157225 GAT 157227 ||| Sbjct 11826 GAT 11824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505326270204480