Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq189893 165 2e-35
seq8138 159 8e-34
seq21304 154 3e-32
seq16573 113 1e-19
seq6632 102 2e-16
seq114383 84.2 5e-11
>seq189893
Length=523
Score = 165 bits (182), Expect = 2e-35
Identities = 162/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || ||||| || |||||||| | ||| | || |||||
Sbjct 285 ACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATCTTCC 344
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || |||||||| || |||||||| ||||||||||| |||||||| ||||||||
Sbjct 345 AGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 404
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| || || ||||| ||||| || || || || ||
Sbjct 405 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 464
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || ||||| ||||||||
Sbjct 465 CCCGTAAGGGTCTTCACAAAGATCTGCAT 493
>seq8138
Length=52565
Score = 159 bits (176), Expect = 8e-34
Identities = 133/163 (82%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||||
Sbjct 17748 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 17689
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 17688 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 17629
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| || | ||||| |||||||| ||| | ||||| || ||||
Sbjct 17628 ACCTTATGGTGGATTGGTATTAAGTGGGTTGCAGGTGGGCAAG 17586
>seq21304
Length=31350
Score = 154 bits (170), Expect = 3e-32
Identities = 174/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| | || || || ||||| || || ||||||
Sbjct 353 ATGCCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 412
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || |||||||| || |||||||| ||||||||
Sbjct 413 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 472
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| ||||| || || ||||| || | ||| || || || ||
Sbjct 473 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 532
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| || || || || || ||||| |||||||||||
Sbjct 533 ACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 585
>seq16573
Length=30794
Score = 113 bits (124), Expect = 1e-19
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 24079 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 24020
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| ||
Sbjct 24019 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 23960
Query 269258 GA 269259
||
Sbjct 23959 GA 23958
>seq6632
Length=32526
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | | || |||||||| || || ||||| || |||||||| || ||||||||
Sbjct 9559 GGAGAACGTGTTGTAGCTTTTGCAGCAGTGGAAGGAATTTTCTTTTCTGGCTCTTTTGCA 9618
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| |
Sbjct 9619 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTT 9678
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 9679 ATCAGTAGAGATGA 9692
Score = 84.2 bits (92), Expect = 5e-11
Identities = 92/121 (76%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955
||||| | ||| |||| ||||||| ||||| || | || || | ||||| || || |
Sbjct 7464 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAGGCTCGGTGTTTCTATGGCT 7523
Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015
||||||| || || |||||||| |||||||| ||||||||||| | || || || || |
Sbjct 7524 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACA 7583
Query 269016 T 269016
|
Sbjct 7584 T 7584
>seq114383
Length=219
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||||||| || ||||| ||||| ||| ||||||| ||| | || |||||
Sbjct 8 GTAGAAAATCCGTTTGACTTCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTT 67
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592
|||||||| ||| | | ||||||| ||||| || |||||
Sbjct 68 GAGAAGCGAGTAGGCGAGTATCAGAGGATGGGAGTCATGTC 108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147468920493712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |