Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq3306 145 1e-29
seq3404 122 1e-22
>seq3306
Length=279808
Score = 145 bits (160), Expect = 1e-29
Identities = 217/307 (71%), Gaps = 1/307 (0%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || || || ||||| || ||| | |||| || ||| | | |||
Sbjct 153340 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 153281
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| ||||| | ||| ||||||||||| ||||||||||| | ||||
Sbjct 153280 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 153221
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
||||||| | || |||| || ||||| || || || || || || | ||| | ||
Sbjct 153220 AGCAGATAGCATTTCCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTG 153161
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| ||||| |||||||| || || |||| ||| || | | || | ||||| |||||
Sbjct 153160 TTTCACCAAAGATGGCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCA 153101
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977
||| || ||||| || ||||| | ||||| || || ||||| |||||||||||
Sbjct 153100 TAGCATCAATGTCCCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 153041
Query 8978 TTATTAA 8984
|||||||
Sbjct 153040 TTATTAA 153034
Score = 122 bits (134), Expect = 1e-22
Identities = 172/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
|| |||| ||| || || ||||| || || ||| ||| || ||||| || |||||||
Sbjct 151288 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 151229
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||||||| ||||| || ||||| |||||||| | || ||
Sbjct 151228 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 151169
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|| | ||||| |||| || ||||||| | ||| | ||| || | | |||||
Sbjct 151168 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 151109
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | || ||||||||||| || ||||| |||
Sbjct 151108 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 151049
Query 9862 TG 9863
||
Sbjct 151048 TG 151047
>seq3404
Length=932556
Score = 122 bits (134), Expect = 1e-22
Identities = 148/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| |||| || |||| ||||| || |||||||||||||| | ||||
Sbjct 17983 TCTTAACTATCTCAAAGCCAGTTGCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGG 17924
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || || |||||||||||||| || | ||| | ||||
Sbjct 17923 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGC 17864
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || || | |||||| |||| ||||| | || || || || |||||||
Sbjct 17863 TTTCTCCAAAAATACCATTGGGATGGGGTTTTTCAAGCAGCAAGCCCACATAGAACTCCA 17804
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| ||||||||||| || ||
Sbjct 17803 GAGCATCGATGTCTCCATACAG 17782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 706165731252160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |