Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq3306 145 1e-29 seq3404 122 1e-22 >seq3306 Length=279808 Score = 145 bits (160), Expect = 1e-29 Identities = 217/307 (71%), Gaps = 1/307 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || || || ||||| || ||| | |||| || ||| | | ||| Sbjct 153340 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 153281 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| ||||||||||| ||||||||||| | |||| Sbjct 153280 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 153221 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || || || || || | ||| | || Sbjct 153220 AGCAGATAGCATTTCCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTG 153161 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||| ||| || | | || | ||||| ||||| Sbjct 153160 TTTCACCAAAGATGGCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCA 153101 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || ||||| || ||||| | ||||| || || ||||| ||||||||||| Sbjct 153100 TAGCATCAATGTCCCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 153041 Query 8978 TTATTAA 8984 ||||||| Sbjct 153040 TTATTAA 153034 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 || |||| ||| || || ||||| || || ||| ||| || ||||| || ||||||| Sbjct 151288 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 151229 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 151228 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 151169 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 || | ||||| |||| || ||||||| | ||| | ||| || | | ||||| Sbjct 151168 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 151109 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 151108 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 151049 Query 9862 TG 9863 || Sbjct 151048 TG 151047 >seq3404 Length=932556 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| ||||| || |||||||||||||| | |||| Sbjct 17983 TCTTAACTATCTCAAAGCCAGTTGCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGG 17924 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 17923 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGC 17864 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | |||||| |||| ||||| | || || || || ||||||| Sbjct 17863 TTTCTCCAAAAATACCATTGGGATGGGGTTTTTCAAGCAGCAAGCCCACATAGAACTCCA 17804 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| ||||||||||| || || Sbjct 17803 GAGCATCGATGTCTCCATACAG 17782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706165731252160