Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq12144 131 2e-25
seq189893 123 2e-23
seq21304 113 4e-20
seq109229 98.7 9e-16
>seq12144
Length=38566
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||| | || | |||||||||||| || | ||| || ||| |
Sbjct 1365 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 1306
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || ||| ||||||| | || |||||||| || |||
Sbjct 1305 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 1246
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | || |||||||| || | | |||||| | | |||||
Sbjct 1245 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 1186
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || |||||||||||||||||
Sbjct 1185 TCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||| | || | || |||||||| || | ||| || ||| |
Sbjct 453 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 394
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || ||| ||||||| | || |||||||| || |||
Sbjct 393 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 334
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | || |||||||| || | | |||||| | | |||||
Sbjct 333 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 274
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || || ||||||||||||||
Sbjct 273 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 227
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||| | || | || |||||||| || | ||| || || |
Sbjct 909 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 850
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || || | ||||| | || |||||||| || |||
Sbjct 849 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 790
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| ||||| | || || || || ||| | | |||||| | | || ||
Sbjct 789 ATACCTTCCTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 730
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | ||||||||||| ||||| || || |||||||||||||||||||
Sbjct 729 TCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGC 681
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||| | || | || |||||||| || | ||| || ||| |
Sbjct 681 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 622
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || || | ||||| | || |||||||| || |||
Sbjct 621 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 562
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | || |||||||| || | | |||||| | | |||||
Sbjct 561 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 502
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || || | || |||||||||||||||||
Sbjct 501 TCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 455
Score = 109 bits (120), Expect = 5e-19
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||| | || | || |||||||| || | ||| ||||| |
Sbjct 1137 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATC--TG 1080
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| || || || ||| |||||||| || || | ||||| | || |||||||| || |
Sbjct 1079 AGAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGG 1020
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
|||| ||||| ||||| | || |||||||| || | | |||||| | | ||||
Sbjct 1019 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGA 960
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| |||| |||||||| || || || | || ||||| |||||||||||||
Sbjct 959 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATGC 909
>seq189893
Length=523
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||||| || | || || |||||||| | ||| || || || ||| |
Sbjct 278 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCC 337
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || ||||||| | || |||||||| |||||||| ||||| ||
Sbjct 338 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 397
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | |||||| | | | || || || | ||||||
Sbjct 398 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 457
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || ||||| || |||||||||||||||||
Sbjct 458 GGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493
>seq21304
Length=31350
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||||| |||| ||| || ||||| || | ||| || || |
Sbjct 356 CCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 415
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| ||| |||||||| || || ||||||| | || |||||||| || |||
Sbjct 416 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 475
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | || || |||||||| | | |||||| | | || ||
Sbjct 476 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 535
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || |||||||||||||||||
Sbjct 536 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 582
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||||| |||| ||| || ||||| || | ||| || |||
Sbjct 128 CCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 187
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| || |||||||| || || ||||||| | || |||||||| || |||
Sbjct 188 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGA 247
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | || || |||||||| | | |||||| | | || ||
Sbjct 248 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 307
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | |||||||| || || || || || |||||||||||||||||||
Sbjct 308 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGC 356
>seq109229
Length=213
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||||||||||||||| || | || || | || ||||| || || || || ||||| ||
Sbjct 181 ATCCTCCAGCTGTTTGCCCGCGAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTT 122
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || |||||||| ||| |||||| | | ||||| |||| |||||
Sbjct 121 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGAT 62
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
||| || || || || || ||||| ||||||||||||
Sbjct 61 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 25
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446798592035040
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