Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq21304 107 2e-18 seq12144 105 5e-18 >seq21304 Length=31350 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| ||||||||||| || ||||||||||||| | ||| |||| Sbjct 142 CAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTC 201 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | |||||| ||||| Sbjct 202 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 261 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| |||| ||||||| Sbjct 262 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 319 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || ||||| |||||||| Sbjct 320 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 354 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| ||||||||||| || ||||||||||| | || ||| | || Sbjct 370 CAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 429 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 430 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 489 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| |||| ||||||| Sbjct 490 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 547 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || ||||| || || ||||| ||||||||||| Sbjct 548 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 585 >seq12144 Length=38566 Score = 105 bits (116), Expect = 5e-18 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| ||||| || ||||||||||||| || ||| | | || Sbjct 439 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 380 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 379 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 320 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| |||||| | | | ||||| | |||||| || | ||||||| Sbjct 319 CTGGATCTTTGC--CTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 262 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || |||||||| || || ||||| |||||||| ||| Sbjct 261 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTTG 223 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || || || ||||| || ||||||||||||| || ||| | | || Sbjct 1351 CAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1292 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 1291 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 1232 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| |||||| | | | ||||| | |||||| || | ||||||| Sbjct 1231 CTGGATCTTTGC--CTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1174 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||||||| || || ||||| |||||||| Sbjct 1173 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| ||||| || ||||||||||||| || ||| | | || Sbjct 667 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 608 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| || | || |||| ||| || || || | ||| || ||||| Sbjct 607 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 548 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| |||||| | | | ||||| | |||||| || | ||||||| Sbjct 547 CTGGATCTTTGC--CTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 490 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||| || || ||||| |||||||| Sbjct 489 GTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 455 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | ||| || ||||| ||||| || ||||||||||| | || ||| | | || Sbjct 895 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 836 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| || | || |||| ||| || || || | || || ||||| Sbjct 835 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTC 776 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| ||||| | | | ||||| | |||||| || | ||||||| Sbjct 775 CTGGATCTTCGCT--TTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 718 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || || ||||| |||||||| Sbjct 717 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403772958268360