Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq12144 100 2e-16
seq189893 96.9 2e-15
>seq12144
Length=38566
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| |||| |||| ||| | ||| || ||| ||||| || || |||||||| |
Sbjct 1139 TACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTG 1080
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | ||| | || || | || || || || || || || | || ||||||| ||
Sbjct 1079 AGAGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGG 1020
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||| |||||| || ||| ||||||||||| | || || | || |
Sbjct 1019 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGA 960
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || | || || || || || |||||||| |||||||| |||||||||
Sbjct 959 CCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 910
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| |||| ||| | ||| ||||| ||||| || || ||||| || |||
Sbjct 1365 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 1306
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || |||||||| || || | || ||||||| |||
Sbjct 1305 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 1246
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| || ||| ||||||||||| | || || | || ||
Sbjct 1245 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 1186
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || ||||| |||| ||| ||||| || ||||||||
Sbjct 1185 TCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| |||| |||| ||| | ||| || ||| ||||| || || ||||| || |
Sbjct 455 TACCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 396
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || | || || | || || |||||||| || || | || ||||||| ||
Sbjct 395 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGG 336
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | |||||| |||||| || ||| ||||||||||| | || || | || |
Sbjct 335 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGA 276
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| || | || || || || || |||| ||| || || || |||||||| ||
Sbjct 275 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTT 224
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| |||| |||| ||| | ||| || ||| ||||| || || ||||| || |||
Sbjct 681 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 622
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || || || || || || | || ||||||| |||
Sbjct 621 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 562
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| || ||| ||||||||||| | || || | || ||
Sbjct 561 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 502
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || ||||| |||||||| ||||| || ||||||||
Sbjct 501 TCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 455
>seq189893
Length=523
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||||| |||||| ||| |||||||||||| ||||| ||||||||| || | ||
Sbjct 281 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 340
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | || || || ||||| || || | || ||||| | || | ||||| || ||
Sbjct 341 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 400
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||| || |||||| || | || || ||
Sbjct 401 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 460
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| ||||| | ||| ||||| || ||||||||
Sbjct 461 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333859857136484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |