Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq12144 131 1e-25
seq109229 87.8 2e-12
>seq12144
Length=38566
Score = 131 bits (144), Expect = 1e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||||||||| ||||||| || ||||||| |||| || ||| | |
Sbjct 227 ATGCAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 286
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| ||| ||| ||||| ||||| ||||| || || ||
Sbjct 287 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 346
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | ||||||| ||||| || ||| |||||
Sbjct 347 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 406
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || |||||||| || ||| | |||||
Sbjct 407 ATCCAGAAGGAATCCACCCTCCATCTTGTGCT 438
Score = 125 bits (138), Expect = 6e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||||||||| ||||||| |||| || ||| | |
Sbjct 1139 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 1198
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| ||| ||| ||||| ||||| ||||| || || ||
Sbjct 1199 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1258
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | ||||||| ||||| || ||| |||||
Sbjct 1259 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1318
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| || || ||| | |||||
Sbjct 1319 ATCCAGAAGGAATCTACTCTCCATCTTGTGCT 1350
Score = 122 bits (134), Expect = 8e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||||||||| ||||||| | || || ||| | |
Sbjct 455 ATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 514
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| ||| ||| ||||| ||||| ||||| || || ||
Sbjct 515 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 574
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || ||||| || | ||||||| ||||| || ||| |||||
Sbjct 575 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 634
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || |||||||| || ||| | |||||
Sbjct 635 ATCCAGAAGGAATCCACCCTCCATCTTGTGCT 666
>seq109229
Length=213
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || ||||||| | || || ||| | |
Sbjct 26 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 85
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| || ||| ||||| ||||| || |||||||||||
Sbjct 86 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 145
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || |||||||| | || |||| ||||| || ||| |||||
Sbjct 146 CAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 205
Query 25179 ATTCAAAA 25186
|| || ||
Sbjct 206 ATCCAGAA 213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431921282438660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |