Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq12144 129 5e-25 seq109229 105 6e-18 seq189893 98.7 8e-16 seq21304 95.1 1e-14 seq9972 86.0 5e-12 >seq12144 Length=38566 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | ||||| || || |||| || || || || || Sbjct 224 AAGATGCAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCC 283 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || | || ||| || || |||||||| || ||||| |||||| Sbjct 284 AGTGACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 343 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||||||||| ||| | || ||| ||||||| | ||||| ||| Sbjct 344 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 403 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||||||| | ||| | || |||| || | || ||| Sbjct 404 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGT 454 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | |||||||| || |||| || || || || ||| Sbjct 1139 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCCAGT 1198 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| || || |||||||| || ||||| |||||||| Sbjct 1199 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1258 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 1259 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1318 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||| || | ||| | || |||| Sbjct 1319 ATCCAGAAGGAATCTACTCTCCATCTTGTGCTGCG 1353 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| ||||| || || ||| Sbjct 911 ATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 970 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| || || |||||||| || ||||| |||||||| Sbjct 971 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1030 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | || ||| || ||| |||| ||||||||| Sbjct 1031 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGATTACAAC 1090 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | ||| | || |||| || | || ||| Sbjct 1091 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGT 1138 >seq109229 Length=213 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | || || || || |||||||||| || || || Sbjct 23 AACATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCC 82 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || || ||||| || Sbjct 83 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 142 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || ||||| || ||||||||| | |||||| ||||||| | ||||| ||| Sbjct 143 CAGCAGAGGCTGATATTCGCGGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTAC 202 Query 22396 AACATTCAAAA 22406 ||||| || || Sbjct 203 AACATCCAGAA 213 >seq189893 Length=523 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || ||||| |||| || || || ||| || | Sbjct 494 GATGCAGATCTTTGTGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTC 435 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || || || || || ||||| || ||||| || ||||| Sbjct 434 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 375 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||| || || ||| | || ||| ||| || | || || ||||| Sbjct 374 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGGACTTTGTCTGACTACAA 315 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || |||||| | ||| | || ||| || | || || ||| Sbjct 314 CATTCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGGGGTGGT 266 >seq21304 Length=31350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 354 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 295 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| ||||| || ||||| Sbjct 294 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 235 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || || |||||| | ||||| |||||| Sbjct 234 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCCGACTACAAC 175 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || ||||| | ||| | || |||| Sbjct 174 ATCCAGAAGGAGTCCACTCTGCATCTGGTGCTGCG 140 >seq9972 Length=29549 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||| || ||||| | |||| ||| || ||| ||||| ||||| | || ||||| Sbjct 11951 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 11892 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||| |||||||| |||||||||| ||||||||||||||| || || Sbjct 11891 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 11842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418365432271660