Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq189893 131 4e-25 seq12144 129 1e-24 >seq189893 Length=523 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 267 CCACCCCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 326 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || || |||||||| | ||| ||| | || Sbjct 327 AAAGTCCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 386 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 387 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 446 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| || || ||||| || || |||||||| Sbjct 447 TCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493 >seq12144 Length=38566 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | ||| ||| || ||||| || |||| Sbjct 913 CATG-CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGT 855 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || ||||||||||| | ||| ||| | Sbjct 854 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGA---T 798 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| || |||||||| |||||||||||||| || || | || || | Sbjct 797 CGGGGGGAATACCTTCCTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGG 738 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||| ||||| || || |||||||| Sbjct 737 GCTCAACCTCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 683 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | ||| ||| || ||||| || |||| Sbjct 685 CATG-CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGT 627 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || ||||| | || || || ||||||||||| | ||| || || Sbjct 626 CGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---AT 570 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || ||||| || |||||||| || || ||||| || || || | || || | Sbjct 569 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGG 510 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 509 GCTCGACCTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 455 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || || || | ||| || || || ||| Sbjct 1122 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCT 1063 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || ||||||||||| | ||| || ||| ||| || ||||| || Sbjct 1062 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---ATCGGGGGGAATGCCTTCCTTG 1006 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || ||||| || || || | || || | || || || || ||||| Sbjct 1005 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 946 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||| ||||| ||||| |||||||| Sbjct 945 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175628488734792