Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq189893 96.9 3e-15 seq9972 91.5 1e-13 seq12144 86.0 6e-12 >seq189893 Length=523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||||||||||||||| || ||| || || Sbjct 281 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 340 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || ||||| | | |||| || | ||| || || ||||| || ||||| || || Sbjct 341 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 400 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | ||||| | | || ||||||| ||| | || Sbjct 401 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 460 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || ||||| |||||||| Sbjct 461 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493 >seq9972 Length=29549 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | || || ||||||||||| ||| ||||| || ||||||||| Sbjct 11951 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 11892 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || || || ||||| | ||||||| | ||||||||||| ||||||||| Sbjct 11891 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 11842 >seq12144 Length=38566 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || ||||| || |||||||||||| || || || Sbjct 441 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 382 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || || |||| | |||| || | ||| || || || || || ||||| ||| Sbjct 381 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 322 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| ||| || | | || | |||||| | | ||| ||||||| || | Sbjct 321 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 262 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| || |||||||| |||||||| Sbjct 261 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 227 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 ||||| || | || |||| || | ||| | | || ||||| || |||||||||||| Sbjct 1368 CAGCCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCG 1309 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 || || || || || || || || |||| | |||| || | ||| || || || Sbjct 1308 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGG 1249 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || ||||| ||||| ||| ||| || | | || | |||||| | | ||| Sbjct 1248 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCG 1189 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | || ||||| ||||| || || ||||| |||||||| Sbjct 1188 ACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || |||| || | ||| | | | || ||||| || ||||||||||| Sbjct 910 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 851 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || || || || | |||| || | ||| || || || || Sbjct 850 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 791 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| || ||| | | || | |||||| | | ||| || Sbjct 790 AATACCTTCCTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAAC 731 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | ||||| |||||||| || || ||||| ||||||||| Sbjct 730 CTCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494610069526080