Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq189893 96.9 3e-15
seq9972 91.5 1e-13
seq12144 86.0 6e-12
>seq189893
Length=523
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461
||| || | ||| | | | ||||||||||||||||||||||| || ||| || ||
Sbjct 281 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 340
Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
|| || || ||||| | | |||| || | ||| || || ||||| || ||||| || ||
Sbjct 341 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 400
Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581
||| || |||| | ||| | ||||| | | || ||||||| ||| | ||
Sbjct 401 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 460
Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| || || || || || ||||| ||||||||
Sbjct 461 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493
>seq9972
Length=29549
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701
|||| ||| || || | || || ||||||||||| ||| ||||| || |||||||||
Sbjct 11951 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 11892
Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751
|| || || ||||| | ||||||| | ||||||||||| |||||||||
Sbjct 11891 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 11842
>seq12144
Length=38566
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459
|||| || | ||| | | | || ||||| || |||||||||||| || || ||
Sbjct 441 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 382
Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519
|| || || || || |||| | |||| || | ||| || || || || || ||||| |||
Sbjct 381 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 322
Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579
|| ||| ||| || | | || | |||||| | | ||| ||||||| || |
Sbjct 321 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 262
Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || || ||||| || |||||||| ||||||||
Sbjct 261 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 227
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 138385 CAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCG 138444
||||| || | || |||| || | ||| | | || ||||| || ||||||||||||
Sbjct 1368 CAGCCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCG 1309
Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504
|| || || || || || || || |||| | |||| || | ||| || || ||
Sbjct 1308 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGG 1249
Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
|| || ||||| ||||| ||| ||| || | | || | |||||| | | |||
Sbjct 1248 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCG 1189
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||||| || | || ||||| ||||| || || ||||| ||||||||
Sbjct 1188 ACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || | || |||| || | ||| | | | || ||||| || |||||||||||
Sbjct 910 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 851
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || || || || || || || | |||| || | ||| || || || ||
Sbjct 850 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 791
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|||||||| ||||| ||| || ||| | | || | |||||| | | ||| ||
Sbjct 790 AATACCTTCCTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAAC 731
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||||| || | ||||| |||||||| || || ||||| |||||||||
Sbjct 730 CTCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494610069526080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |