Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq12144 118 1e-21
seq21304 111 1e-19
>seq12144
Length=38566
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | || || || || || || ||||| ||| || ||||| |
Sbjct 441 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 382
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || || |||||| | |||||||||||| || ||||| ||||||
Sbjct 381 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 322
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | |||||| |||| ||| |
Sbjct 321 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 262
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||||||||| || |||||||| ||||||||
Sbjct 261 GTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 227
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | ||||| || || || || ||||| ||| || ||||| |
Sbjct 1353 CGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 1294
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || || |||||| | |||||||||||| || ||||| ||||||
Sbjct 1293 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 1234
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | |||||| |||| ||| |
Sbjct 1233 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 1174
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || |||||||| || || ||||| ||||||||
Sbjct 1173 GTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | || || || || || || ||||| || || ||||| |
Sbjct 897 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 838
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| |||||| | |||||||||||| || || || ||||||
Sbjct 837 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTG 778
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| ||| || | | || | |||||| | ||| || |||| ||| |
Sbjct 777 TCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 718
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||||||| ||||| || || ||||| |||||||||
Sbjct 717 GTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 682
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | || || || || || || ||||| ||| || ||||| |
Sbjct 669 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 610
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| |||||| | |||||||||||| || ||||| ||||||
Sbjct 609 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 550
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | |||||| || | ||| |
Sbjct 549 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 490
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || ||||||| || || ||||| ||||||||
Sbjct 489 GTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 455
Score = 105 bits (116), Expect = 6e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | || || || || || || |||||||| | || ||| |
Sbjct 1125 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCA 1066
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || |||||| |||||| | |||||||||||| || ||||| ||||||
Sbjct 1065 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 1006
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | |||||| || | ||| |
Sbjct 1005 TCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 946
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| |||||||||| || || || || |||||||||
Sbjct 945 GTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCATG 910
>seq21304
Length=31350
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||||| ||| | || ||||| || || || ||||| ||| | |||||
Sbjct 140 CGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCG 199
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || ||||| |||||| | ||||||||| || || ||||||||||||
Sbjct 200 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGAATGCCCTCCTTG 259
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | || | |||||| | ||| || || | ||| |
Sbjct 260 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 319
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| ||||| ||||| || || ||||| |||||||||
Sbjct 320 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473917596311360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |