Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq3306 152 7e-32
seq3404 123 4e-23
>seq3306
Length=279808
Score = 152 bits (168), Expect = 7e-32
Identities = 179/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
||||| | ||| ||||| |||| |||||| ||| |||| ||||| || || ||||| ||
Sbjct 151288 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 151229
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
| || ||||||| ||||||||| ||||||||||| || || |||||||| || || ||
Sbjct 151228 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 151169
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|||||||||||||| || | ||| || | ||| ||| | || || | | || |
Sbjct 151168 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 151109
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966
|| | ||| | |||| || || || || || || ||||||||||| || ||||| | |
Sbjct 151108 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 151049
Query 9967 TG 9968
||
Sbjct 151048 TG 151047
Score = 132 bits (146), Expect = 7e-26
Identities = 207/296 (70%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || || || || ||||||||| || ||||| ||| | || || |
Sbjct 153340 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 153281
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | || || || || || | || ||||||||||| |||||||||||| | ||||
Sbjct 153280 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGG 153221
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
||||||| | || |||| || ||||| | || || || || || | ||| | ||
Sbjct 153220 AGCAGATAGCATTTCCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTG 153161
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||| ||||||||||| || || || | ||| |||| | ||| | ||| || || |
Sbjct 153160 TTTCACCAAAGATGGCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCA 153101
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| || | ||| ||||| || |||||| || || || || || || || |||
Sbjct 153100 TAGCATCAATGTCCCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 153045
Score = 96.9 bits (106), Expect = 5e-15
Identities = 142/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
|| || |||||||| | ||| || | | || ||||| | ||| ||| | |||
Sbjct 152531 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTATACTCCTGGTCATGTATCTGGAAAGTG 152472
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
|| |||| || | |||||| ||||||| |||||||| || || || ||||||||||||
Sbjct 152471 TCGGGCAGAAGCGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 152412
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|| ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| |
Sbjct 152411 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAAC 152354
Query 9671 CGCTGAGTTGCTGGACATA 9689
| || || || || |||||
Sbjct 152353 CACTCAGGTGTTGCACATA 152335
>seq3404
Length=932556
Score = 123 bits (136), Expect = 4e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025
|| ||||| || ||||||||||||||| | |||||||||||| ||| | | |||||
Sbjct 17957 CCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 17898
Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085
|||| |||||||||||| || | ||| | ||||| || || || || || |||| |
Sbjct 17897 TTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGATGG 17838
Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145
|||||||| | | ||||| |||| || | ||| |||| ||| ||||| || ||
Sbjct 17837 GGTTTTTCAAGCAGCAAGCCCACATAGAACTCCAGAGCATCGATGTCTCCATACAGCTCT 17778
Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178
|||| ||| || || |||| | ||| ||| ||
Sbjct 17777 TCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 17745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 721318311437600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |