Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq263127 295 5e-74 seq9782 111 1e-18 seq3277 87.8 1e-11 seq17065 86.0 5e-11 seq5191 86.0 5e-11 >seq263127 Length=2033 Score = 295 bits (326), Expect = 5e-74 Identities = 959/1470 (65%), Gaps = 22/1470 (1%) Strand=Plus/Plus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| ||||| || || ||||||||||| | ||||| || || ||||| Sbjct 511 TTATCTACAGCAGAAACATTGAGGATGCCATTGGCATCGATGTCAAAAGTAACCTCAATC 570 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||||||||| | | || || ||||| ||| | | || |||| || || Sbjct 571 TGAGGGACCCCACGGGGTGCTGGAGGGATGCCTGTGAGCTCGAACTTTCCAAGCAGGTTG 630 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATT 517428 || || || || | | |||||| || | | || || |||| | ||| || || Sbjct 631 TTGTCCTTGGTCATGGCCCTTTCACCTTCATACACCTGAATGAGTA-CACCAGGCTGGTT 689 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 || || || || || || | |||| | | || || || || || || | | | Sbjct 690 GTCAGAGTAGGTGGTGAA-AGTCTGTGTCTGCTTGGTGGGGATGGTGGTATTGCGCTTGA 748 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | ||||| | || || || ||||| | |||||| ||||||||||||||||| | Sbjct 749 TGAGGACAGTCATGACTCCGCCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATCCA 808 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || |||| || ||| | | ||| ||||| ||||| || | || Sbjct 809 AGAGCAGCAAATCCTGAACGTTCTCAGACTTGTCTCCAGATAGAATGGCTGCCTGGACAG 868 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| |||||||||||||| || |||| | | || || | ||| ||||||| Sbjct 869 CTGCACCATAGGCAACAGCTTCATCGGGGTTAATGCTCTTGTTCAGCTCTTTTCCATTGA 928 Query 517668 AAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | | ||||||| ||| | ||| || || | | || || || || || ||| Sbjct 929 AGAAGTCTTGCAGAAGTT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAAGACA 987 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 || ||||| | |||||| || ||||| || | ||| | | || || || || || Sbjct 988 ATATCATGGATCTGTGACTTGTCCAGCTTGGCATCTCGAAGGGCCTTCTCTACAGGGTCC 1047 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || | | |||| ||| | | | || || ||| ||| | |||| | | | Sbjct 1048 AGTGTGCCACGGAACAGGTCAGCATTCAACTCCTCAAATCGAGCCCGGGTAATGGAGGTA 1107 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 | | |||||||| || | | |||||||| ||||| | | || || || || Sbjct 1108 TAGAAGTCAATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAG 1167 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGA 517962 || | || || || || || || || || | || | || | ||| | | || | Sbjct 1168 AGGGTGCGCTTGGCCCGCTCGCAGGCCGTGCGGAGACGGCGGACAGCTCTCTTGTTCTCA 1227 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACAAGAC 518021 |||| ||| | || | |||| |||||| || ||| | | || | || | | Sbjct 1228 CTGATG----TCTTTCTTGTGCTTTCGCTTGAACTCAGCAATGAAATGAT-TGACCATTC 1282 Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 | || ||||||||||| || || || | || | ||| | || | | | || | |||| Sbjct 1283 GGTTGTCAAAATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTTGATTTGACCTCAAAAA 1342 Query 518082 GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 |||||| |||| || | | | |||||| || ||||| |||| |||||||| | Sbjct 1343 TTCCATCCTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCCAAGTCAAAAATGA 1402 Query 518142 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 | |||||| |||| | || ||||| | ||||| |||| |||||||||||||| Sbjct 1403 GCACATTCCTTTCAGCTCCGACCTTCTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTG 1462 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 ||||||| || |||| | ||||| || |||||||| |||| |||||||| || || | Sbjct 1463 GTTCATTGATGATTCGAAGTACATTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCT 1522 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTA 518320 ||| || || || || || || || || || || | || || | || || ||||| Sbjct 1523 GTCGCTGAGAGTCATTGAAGTAAGCGGGCACTGTGACCACAGCGTTGGTAACAGTCTTT- 1581 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | || || ||| ||| ||||| || | | || ||| || || | || ||| Sbjct 1582 CCGAGGTACGCTTCTGCAATTTCCTTCATCTTTGTCAGAACCATGGAGGACACTTCCTCT 1641 Query 518381 GGGGA-ATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 518439 ||| | | | | ||| | | |||| ||| |||| | | || | || | Sbjct 1642 GGGTAGAAACTTTTTGTCTCCCCTTTG-TATTCCACTTGGACCTTGGGCCTGCCTGCATC 1700 Query 518440 ATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 518499 ||| | || | || ||||||| |||||||| || |||||| |||| ||| Sbjct 1701 ATTCACCACCATGAAGGGCCAGTGCTTCATATCAGACTGAACAACAGCATCATCAAACCT 1760 Query 518500 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATA 518559 | || || | ||||| |||||||||| || ||||| || || |||||| | |||| Sbjct 1761 ACGCCCGATCAGACGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGATT 1820 Query 518560 TTTGGCTGCATCTCCAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618 ||||| ||||| ||||| | || | ||||| || || || | |||||| ||| || | Sbjct 1821 CTTGGCCGCATCCCCAATTA-ATCTCTCTGTGTCCGTGAAAGCAACATAGCTTGGTGTGG 1879 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 |||| ||||| || ||||| ||||||||||| || || |||| || | ||||| |||| Sbjct 1880 TGCGGTTACCCTGGTCATTGGCAATAATTTCCACCTTTCCATGCTGGAAGACACCCACAC 1939 Query 518679 AACTAAAAGTTGTTCCTAAATCAATACCAA 518708 | | || || || | |||||| |||| Sbjct 1940 AGGAGTAGGTGGTGCCGAGATCAATGCCAA 1969 >seq9782 Length=92745 Score = 111 bits (122), Expect = 1e-18 Identities = 279/418 (67%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | || || || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 38179 CGGCACTGACGTTCAGGATACCATTGGCATCTATGTCAAAAGTGACCTCGATCTGGGGGA 38238 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || ||||| ||| | | |||| | ||||| || || || | Sbjct 38239 CTCCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 38298 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGA 517434 | || | | ||||||||| | | |||| || | || | | || || ||||| Sbjct 38299 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGA 38356 Query 517435 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 517493 || || || || |||| ||| ||| |||||| || ||||| | | || | | Sbjct 38357 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTAGGAATGGTGGTGTTACGCTTGATGAGAG 38415 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 38416 CAGTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 38475 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || || | || ||| | | || | || ||||||||||| | |||||||| Sbjct 38476 GCAGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCAC 38535 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 | || |||||||| ||||||||||| | | | || || | ||| |||||||| || Sbjct 38536 CGTAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 38593 >seq3277 Length=206865 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || |||||||||||||||| ||||| | ||||||||| | || |||||||| || || Sbjct 52133 GGCTCATTAATAATTCTCATCACATTCAACCCAGCAATTGTCCCAGCATCTTTTGTAGCC 52074 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | || | ||||||||| || || || ||||||| ||| |||| Sbjct 52073 TGACGCTGAGCATCGTTAAAGTAGGCTGGCACAGTAACAACAGCAT 52028 >seq17065 Length=79502 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 366997 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 367056 || || ||| | || || || ||||| || || ||| | ||| | | | ||||||||| Sbjct 53578 GTGGCTACAGTGGCGTTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 53519 Query 367057 TATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 367116 || || || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 53518 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 53459 Query 367117 GG 367118 || Sbjct 53458 GG 53457 >seq5191 Length=291325 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| ||||| |||| | || || ||||| || ||||| Sbjct 29160 CAAAAACTGTATTGGTTGGATTCATTGCGACTTGGTTCTTTGCAGCATCGCCGATCAGCC 29219 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| || || || | || || || || || || ||||| |||||||| |||| Sbjct 29220 TCTCTGTATCCGTGAAGGCGACGTAGCTCGGCGTGGTCCGGTTACCCTGATCATTGGCAA 29279 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | ||| | || || ||||| | | || || || | ||| | Sbjct 29280 TGATTTCCACCTTCCCGTGTTGGAACACGCCAACACAGGAATAGGTGGTGCCAAGATCGA 29339 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 29340 TTCCGACAGC 29349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3767604540916984