Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq263127 437 1e-117 seq5191 192 7e-44 >seq263127 Length=2033 Score = 437 bits (484), Expect = 1e-117 Identities = 1058/1589 (67%), Gaps = 16/1589 (1%) Strand=Plus/Plus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| ||||| ||| | || ||||| || || ||||||||||| ||||| ||||| || Sbjct 396 CTTCTCATCCTCAGCCTTGTACTTCTCAGCTTCTTGGACCATGCGCTCAATATCTTCCTT 455 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTAT 6683 || | ||||| ||||| || || || ||||| ||| ||| || | | ||||| Sbjct 456 ACTCAAGCGGCCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTT-CCTGTGCTCTTAT 514 Query 6684 CTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTG 6743 || ||||| ||||| | || ||||| ||||| | || || | || | ||| || | Sbjct 515 CTACAGCAGAAACATTGAGGATGCCATTGGCATCGATGTCAAAAGTAACCTCAATCTGAG 574 Query 6744 GTGTACCCCTCGG--TGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTT 6801 | ||||| ||| ||| | || || || || | || || | ||||| | |||| Sbjct 575 GG--ACCCCACGGGGTGCTGGAGGGATGCCTGTGAGCTCGAACTTTCCAAGCAGGTTGTT 632 Query 6802 ATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATC 6861 ||| | | | | | |||||||||||| || | ||| || |||| || || || Sbjct 633 GTCCTTGGTCATGGCCCTTTCACCTTCATACACCTGAATGAGTACACCAGGCTGGTTGTC 692 Query 6862 TTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAAC 6921 || | ||| | ||| | ||| | || || || ||||| | | || | Sbjct 693 AGAGTAGGTGGTGAAAGTCTGTGTCTGCTTGGTGGGGATGGTGGTATTGCGCTTGATGAG 752 Query 6922 CGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAG 6981 ||||| | || || |||||| | ||||| || ||||| || || |||||||| Sbjct 753 GACAGTCATGACTCCGCCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATCCAAGAG 812 Query 6982 TAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 | || || ||||| || | || || | || ||||| || ||||| | || Sbjct 813 CAGCAAATCCTGAACGTTCTCAGACTTGTCTCCAGATAGAATGGCTGCCTGGACAGCTGC 872 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 || || || || || |||||||||||||| | || ||||| ||||| || || || | Sbjct 873 ACCATAGGCAACAGCTTCATCGGGGTTAATGCTCTTGTTCAGCTCTTTTCCATTGAAGAA 932 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 || | | || ||||| || ||||||| || || ||||| ||||| || || || Sbjct 933 GTCTTGCAGAAGTTTCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAAGACAATATC 992 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 || | | || || || | ||| | |||||||| | || || ||||| |||| Sbjct 993 ATGGATCTGTGACTTGTCCAGCTTGGCATCTCGAAGGGCCTTCTCTACAGGGTCCAGTGT 1052 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 |||||||| ||| | || |||||||| || || ||||||||||| |||||||| Sbjct 1053 GCCACGGAACAGGTCAGCATTCAACTCCTCAAATCGAGCCCGGGTAATGGAGGTATAGAA 1112 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 |||| || || || | |||||||| ||||| | | || | | || || | || Sbjct 1113 GTCAATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAGGGT 1172 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || ||||| || ||||| || | ||| || | || | | ||| | || Sbjct 1173 GCGCTTGGCCCGCTCGCAGGCCGTGCGGAGACGGCGGACAGCTCTCTTGTTCTCACTGAT 1232 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 |||||||| || || || || ||||| || ||| || | | || || || Sbjct 1233 GTCTTTCTTGTGCTTTCGCTTGAACTCAGCAATGAAATGATTGACCATTCGGTTGTCAAA 1292 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 |||||| ||||| ||||| || || || || || | |||||| ||||| || || | || Sbjct 1293 ATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTTGATTTGACCTCAAAAATTCCATCCTC 1352 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 ||| | | | || |||||||| || ||||| |||| |||||||||||| || ||| | Sbjct 1353 AATAGTGAGGATTGACACATCAAAAGTGCCACCTCCCAAGTCAAAAATGAGCACATTCCT 1412 Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | | |||||||| | || || || ||||| || || ||||||||||| || Sbjct 1413 TTCAGCTCCGACCTTCTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGAT 1472 Query 7642 AATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 || ||||| ||| || ||||||||||||||| | |||||||| || || ||||| || | Sbjct 1473 GATTCGAAGTACA-TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAG 1531 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACG 7760 | || || ||||| || || || || || || |||| || || |||| ||||| |||| Sbjct 1532 AGTCATTGAAGTAAGCGGGCACTGTGACCACAGCGTTGGTAACAGTCTTTCCGAGGTACG 1591 Query 7761 ATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC-AGCCGCAAAC 7819 ||| || || || ||||| || || |||||||| || || | || || | |||| Sbjct 1592 CTTCTGCAATTTCCTTCATCTTTGTCAGAACCATGGAGGACACTTCCTCTGGGTAGAAAC 1651 Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATA 7879 | ||| || || || || | || |||| | | |||| | | ||| || | Sbjct 1652 T-TTTTGTCTCCCCTTTGTATTCCACTTGGACCTTGGGCCTGCCTGCATCA---TTCACC 1707 Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 ||| | | | ||| | |||||||| || || || |||| | | ||| Sbjct 1708 ACCATGAAGGGCCAGTGCTTCATATCAGACTGAACAACAGCATCATCAAACCTACGCCCG 1767 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || ||||| || ||||||||||||||||| |||||||||| || || ||||| ||| Sbjct 1768 ATCAGACGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTGGCC 1827 Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGA 8059 || ||||| || | | || | | ||||| || || || || ||| || || || Sbjct 1828 GCATCCCCAATTAATC--TC-TCTGTGTCCGTGAAAGCAACATAGCTTGGTGTGGTGCGG 1884 Query 8060 TTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAA 8119 || || ||||| || ||||||||||| || | | || |||| || || || || Sbjct 1885 TTACCCTGGTCATTGGCAATAATTTCCACCTTTCCATGCTGGAAGACACCCACACAGGAG 1944 Query 8120 TACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || || | |||||| || | ||| Sbjct 1945 TAGGTGGTGCCGAGATCAATGCCAACTGC 1973 >seq5191 Length=291325 Score = 192 bits (212), Expect = 7e-44 Identities = 370/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| ||||| || | || ||||| ||||| ||||| || Sbjct 27528 GCACCATAAGCCACAGCTTCATCAGGGTTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 27587 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | ||||| || ||||| || ||||| ||||| |||| || || Sbjct 27588 AAGTCCTGCAGCAGCTTCTGAATCTTTGGGATACGAGTCGACCCACCAACCAGCACAATG 27647 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| |||| ||| | || || || | ||||| ||||| |||| Sbjct 27648 TCATGGATCTGCGATTTGTCGAGCTTGGCATCGCGCAGGGCCTTTTCCACAGGATCCAGG 27707 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| | ||| || ||||| || || | ||||||||| || ||| Sbjct 27708 GTGCCGCGGAACAGGTCGGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGACGTGTAG 27767 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | || ||||||||||| | | || | | || || | Sbjct 27768 AAGTCAATACCCTCATAGAGAGAGTCAATTTCAATACTGGCCTGCGTGCTAGATGACAGA 27827 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | ||||| | || | | ||| | | Sbjct 27828 GTACGCTTTGCACGCTCGCATGCGGTGCGGAGGCGACGGACTGCTCTCTTGTTCTCAGTG 27887 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || | |||||| | || | | | | Sbjct 27888 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTTG--- 27944 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 27945 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 28004 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || ||| Sbjct 28005 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACG 28064 Query 7577 TTC 7579 ||| Sbjct 28065 TTC 28067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633018093585760