Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6632 123 3e-23 seq118744 114 1e-20 seq16573 105 7e-18 >seq6632 Length=32526 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 9694 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9635 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 9634 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 9575 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 9574 CTACAACACGTTCTCC 9559 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | |||||||||||||||||| |||||||| || || Sbjct 7591 ATCTTTAATGTAGGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 7532 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | || ||||| || |||||||| Sbjct 7531 AATCTGGAAGCCATAGAAACACCGAGCCTCTGTGATTTGTACTTC 7487 >seq118744 Length=225 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48346 CTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACA 48405 |||| || || || || |||||||| | ||| | || || |||||||| ||||| | || Sbjct 1 CTGGGCGCTTGTTTCCACCTTGATCCACATAGCGAGCTGTGTTGTTATATACTCTCAGCA 60 Query 48406 TTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTA 48465 |||| |||| ||||| || | ||||| || || | || || || ||| | || | | Sbjct 61 TTGGCACAAGGCCATTAGAATTGCCATTAGTCCCAGCGATGTAGCTACCAGTGGCCCGAA 120 Query 48466 TATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAA 48525 || ||| | | || ||| || || || || ||||| || | |||||| | || | Sbjct 121 TACAACTCACAGCAACACCAATTCCCCCAGCGGACTTAGAAATCAAGGCACACTGCTTCA 180 Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATA 48563 | ||||||||||||||||| || || |||||| ||||| Sbjct 181 GAGTATCATAAATTCCTTCAATGCTGTCATCTTTCATA 218 >seq16573 Length=30794 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 23956 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 24015 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 24016 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 24075 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 24076 CAACCACTCTCTCACC 24091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560237230644960