Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq263127 203 3e-46
seq5191 116 3e-20
seq9782 98.7 8e-15
seq189893 91.5 1e-12
>seq263127
Length=2033
Score = 203 bits (224), Expect = 3e-46
Identities = 378/547 (69%), Gaps = 16/547 (3%)
Strand=Plus/Minus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| || ||||| ||||| | || |||| || || |||
Sbjct 1967 GGCATTGATCTCGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 1908
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|||||||||||||| || |||||| | || || ||| |||||| |||||||||| ||
Sbjct 1907 ATTATTGCCAATGACCAGGGTAACCGCACCACACCAAGCTATGTTGCTTTCACGGACACA 1848
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTA 550175
|| ||| |||| ||||| || || |||| | || || || || ||||| ||
Sbjct 1847 GAGAGATTAATTGGGGATGCGGCCAAGAATCAGGTTGCAATG--AACCCCACCAACACAG 1790
Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235
|||||||||| |||||| | || || | || ||| ||||| | ||||||| | ||||
Sbjct 1789 TTTTTGATGCCAAACGTCTGATCGGGCGTAGGTTTGATGATGCTGTTGTTCAGTCTGATA 1730
Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG----CT 550291
||||||| ||||| ||| | || |||| | | || | || | | ||| |
Sbjct 1729 TGAAGCACTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTGGAAT 1670
Query 550292 ACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
|| | | ||| | ||| | ||| | ||||| || | || || |||||| | |
Sbjct 1669 ACAAAGG--GGA---GACAAAAAGTTTCTACCCAGAGGAAGTGTCCTCCATGGTTCTGAC 1615
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409
|| ||||| ||| || || | | || |||| ||||| | || || | |
Sbjct 1614 AAAGATGAAGGAAATTGCAGAAGCGTACCTCGG-AAAGACTGTTACCAACGCTGTGGTCA 1556
Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469
| || || || || || |||||||| || || || || || |||||||||||| |||||
Sbjct 1555 CAGTGCCCGCTTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATGCTGGAACTATTG 1496
Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529
|||| || ||||| ||||| || ||||||||||| ||||||||||| |||| |||||
Sbjct 1495 CTGGCCTCAATGTACTTCGAATCATCAATGAACCAACTGCTGCTGCTATTGCTTATGGCT 1436
Query 550530 TTGATAA 550536
| |||||
Sbjct 1435 TAGATAA 1429
Score = 170 bits (188), Expect = 2e-36
Identities = 464/707 (66%), Gaps = 4/707 (1%)
Strand=Plus/Minus
Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953
|||| | || ||||| | || || ||||| | ||||| || | || || || | ||
Sbjct 1215 AGCTGTCCGCCGTCTCCGCACGGCCTGCGAGCGGGCCAAGCGCACCCTCTCCTCCAGCAC 1156
Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013
|| ||| |||||| | ||||| | | |||||||||||| | |||| | ||| |
Sbjct 1155 CCAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGAATTGACTTCTATACCTCCATTAC 1096
Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073
|||| |||||| || | | |||| || || | ||| | || || |||||
Sbjct 1095 CCGGGCTCGATTTGAGGAGTTGAATGCTGACCTGTTCCGTGGCACACTGGACCCTGTAGA 1036
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
| | | ||||| | ||| | || || || | | ||||| ||||| | || ||
Sbjct 1035 GAAGGCCCTTCGAGATGCCAAGCTGGACAAGTCACAGATCCATGATATTGTCTTGGTGGG 976
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAA 552191
||| ||||| ||||| || || |||| || | | ||| ||| || |||||| |||
Sbjct 975 TGGTTCTACCAGAATCCCCAAGATTCAGAAACTTCTGCAAGA-CTTCTT-CAATGGAAAA 918
Query 552192 AAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251
| | || | || |||| || ||||| ||||||||||||||||| || | || |||
Sbjct 917 GAGCTGAACAAGAGCATTAACCCCGATGAAGCTGTTGCCTATGGTGCAGCTGTCCAGGCA 858
Query 552252 GCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACT 552311
|| ||||| |||||| | | ||| || | || || | | || | ||||| |||
Sbjct 857 GCCATTCTATCTGGAGACAAGTCTGAGAACGTTCAGGATTTGCTGCTCTTGGATGTCACT 798
Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371
||||| || |||||| | ||||| | ||| || | |||||| || ||| | | |||
Sbjct 797 CCTCTTTCCCTTGGTATTGAAACTGCTGGCGGAGTCATGACTGTCCTCATCAAGCGCAAT 738
Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431
|| || || || || | | | || | || || || || || || ||| |
Sbjct 737 ACCACCATCCCCACCAAGCAGACACAGACTTTCACCACCTACTCTGACAACCAGCCTGGT 678
Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491
|| ||||| | | |||||| ||||| | || || || || || | |||||
Sbjct 677 GTACTCATTCAGGTGTATGAAGGTGAAAGGGCCATGACCAAGGACAACAACCTGCTTGGA 618
Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551
| || | | ||| || ||||| || || ||||| || || || ||||| ||||||
Sbjct 617 AAGTTCGAGCTCACAGGCATCCCTCCAGCACCCCGTGGGGTCCCTCAGATTGAGGTTACT 558
Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|| || |||||||||||||| || | ||||| ||||| |||||
Sbjct 557 TTTGACATCGATGCCAATGGCATCCTCAATGTTTCTGCTGTAGATAA 511
>seq5191
Length=291325
Score = 116 bits (128), Expect = 3e-20
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
||||| |||| || | ||||||||||| ||||| |||||||| || ||||| |||||
Sbjct 28333 GTTACTAATGCTGTCGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACG 28274
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| ||||| || || || || || || |||||||| || || || |||
Sbjct 28273 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAACGAGCCGACAGCT 28214
Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537
||||| | || ||||| || || |||
Sbjct 28213 GCTGCCATAGCCTATGGTCTGGACAAA 28187
Score = 86.0 bits (94), Expect = 5e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||| | || ||||| || || ||||| || |||||||||||||||
Sbjct 26613 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATCGAAGTAACCTTCGATATCGATGCC 26554
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|| || || ||||| ||| ||||| |||||
Sbjct 26553 AACGGCATCTTGAACGTGTCTGCTGTGGATAA 26522
>seq9782
Length=92745
Score = 98.7 bits (108), Expect = 8e-15
Identities = 355/551 (64%), Gaps = 12/551 (2%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || || || || || || ||||| || || || ||||| | || |||| |||
Sbjct 39640 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 39581
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || || |||||||| || || ||| | || || || || || | |||||
Sbjct 39580 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACT 39521
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | || ||||| || || | || | || || ||||||||
Sbjct 39520 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 39461
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| || |||||||| || ||| | ||||| | | | | |||| | || || |||||
Sbjct 39460 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 39401
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290
|| |||||||| ||||| |||| | || || | ||| || || | | |||
Sbjct 39400 GACATGAAGCACTGGCCGTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 39341
Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346
||| |||| | | | || | || | ||||| | || || |||||
Sbjct 39340 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 39286
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTA 550405
| | || ||||| | | || || | | | || | ||| ||| || ||| ||
Sbjct 39285 TCACCAAGATGAAGGAGATTGCTGAGGCGTATCTGGGGCGC-AAGGTACAGAATGCTGTC 39227
Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465
|| || || || || || || |||||||| || || || || || |||||||||||
Sbjct 39226 ATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACC 39167
Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525
|| |||| |||||||| | |||||||||||||| || || || || || | || |||
Sbjct 39166 ATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCCGCGATAGCCTAT 39107
Query 550526 GGACTTGATAA 550536
|| || || ||
Sbjct 39106 GGCCTGGACAA 39096
>seq189893
Length=523
Score = 91.5 bits (100), Expect = 1e-12
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323
|| ||||||||||| ||| |||| ||| ||||| |||| | ||| | |||||
Sbjct 285 ACCAGATGAAGGGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTCCGGCCATCTT 342
Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383
| || || || || ||||| || || || ||||||||||||||||||||||| ||||| |
Sbjct 343 CCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 402
Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443
| || || ||||| || || || || | | | | ||||| || | ||||
Sbjct 403 GGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 462
Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| || ||||| || || || || || |||||
Sbjct 463 TCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4015209470378360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |