Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq263127 203 3e-46 seq5191 116 3e-20 seq9782 98.7 8e-15 seq189893 91.5 1e-12 >seq263127 Length=2033 Score = 203 bits (224), Expect = 3e-46 Identities = 378/547 (69%), Gaps = 16/547 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||| | || |||| || || ||| Sbjct 1967 GGCATTGATCTCGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 1908 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 |||||||||||||| || |||||| | || || ||| |||||| |||||||||| || Sbjct 1907 ATTATTGCCAATGACCAGGGTAACCGCACCACACCAAGCTATGTTGCTTTCACGGACACA 1848 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTA 550175 || ||| |||| ||||| || || |||| | || || || || ||||| || Sbjct 1847 GAGAGATTAATTGGGGATGCGGCCAAGAATCAGGTTGCAATG--AACCCCACCAACACAG 1790 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 |||||||||| |||||| | || || | || ||| ||||| | ||||||| | |||| Sbjct 1789 TTTTTGATGCCAAACGTCTGATCGGGCGTAGGTTTGATGATGCTGTTGTTCAGTCTGATA 1730 Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG----CT 550291 ||||||| ||||| ||| | || |||| | | || | || | | ||| | Sbjct 1729 TGAAGCACTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTGGAAT 1670 Query 550292 ACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || | | ||| | ||| | ||| | ||||| || | || || |||||| | | Sbjct 1669 ACAAAGG--GGA---GACAAAAAGTTTCTACCCAGAGGAAGTGTCCTCCATGGTTCTGAC 1615 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409 || ||||| ||| || || | | || |||| ||||| | || || | | Sbjct 1614 AAAGATGAAGGAAATTGCAGAAGCGTACCTCGG-AAAGACTGTTACCAACGCTGTGGTCA 1556 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || |||||||| || || || || || |||||||||||| ||||| Sbjct 1555 CAGTGCCCGCTTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATGCTGGAACTATTG 1496 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| || ||||| ||||| || ||||||||||| ||||||||||| |||| ||||| Sbjct 1495 CTGGCCTCAATGTACTTCGAATCATCAATGAACCAACTGCTGCTGCTATTGCTTATGGCT 1436 Query 550530 TTGATAA 550536 | ||||| Sbjct 1435 TAGATAA 1429 Score = 170 bits (188), Expect = 2e-36 Identities = 464/707 (66%), Gaps = 4/707 (1%) Strand=Plus/Minus Query 551894 AGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTAC 551953 |||| | || ||||| | || || ||||| | ||||| || | || || || | || Sbjct 1215 AGCTGTCCGCCGTCTCCGCACGGCCTGCGAGCGGGCCAAGCGCACCCTCTCCTCCAGCAC 1156 Query 551954 TCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTC 552013 || ||| |||||| | ||||| | | |||||||||||| | |||| | ||| | Sbjct 1155 CCAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGAATTGACTTCTATACCTCCATTAC 1096 Query 552014 GAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGA 552073 |||| |||||| || | | |||| || || | ||| | || || ||||| Sbjct 1095 CCGGGCTCGATTTGAGGAGTTGAATGCTGACCTGTTCCGTGGCACACTGGACCCTGTAGA 1036 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 | | | ||||| | ||| | || || || | | ||||| ||||| | || || Sbjct 1035 GAAGGCCCTTCGAGATGCCAAGCTGGACAAGTCACAGATCCATGATATTGTCTTGGTGGG 976 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAA 552191 ||| ||||| ||||| || || |||| || | | ||| ||| || |||||| ||| Sbjct 975 TGGTTCTACCAGAATCCCCAAGATTCAGAAACTTCTGCAAGA-CTTCTT-CAATGGAAAA 918 Query 552192 AAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCA 552251 | | || | || |||| || ||||| ||||||||||||||||| || | || ||| Sbjct 917 GAGCTGAACAAGAGCATTAACCCCGATGAAGCTGTTGCCTATGGTGCAGCTGTCCAGGCA 858 Query 552252 GCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACT 552311 || ||||| |||||| | | ||| || | || || | | || | ||||| ||| Sbjct 857 GCCATTCTATCTGGAGACAAGTCTGAGAACGTTCAGGATTTGCTGCTCTTGGATGTCACT 798 Query 552312 CCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAAT 552371 ||||| || |||||| | ||||| | ||| || | |||||| || ||| | | ||| Sbjct 797 CCTCTTTCCCTTGGTATTGAAACTGCTGGCGGAGTCATGACTGTCCTCATCAAGCGCAAT 738 Query 552372 ACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCT 552431 || || || || || | | | || | || || || || || || ||| | Sbjct 737 ACCACCATCCCCACCAAGCAGACACAGACTTTCACCACCTACTCTGACAACCAGCCTGGT 678 Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 || ||||| | | |||||| ||||| | || || || || || | ||||| Sbjct 677 GTACTCATTCAGGTGTATGAAGGTGAAAGGGCCATGACCAAGGACAACAACCTGCTTGGA 618 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | || | | ||| || ||||| || || ||||| || || || ||||| |||||| Sbjct 617 AAGTTCGAGCTCACAGGCATCCCTCCAGCACCCCGTGGGGTCCCTCAGATTGAGGTTACT 558 Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || || |||||||||||||| || | ||||| ||||| ||||| Sbjct 557 TTTGACATCGATGCCAATGGCATCCTCAATGTTTCTGCTGTAGATAA 511 >seq5191 Length=291325 Score = 116 bits (128), Expect = 3e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 28333 GTTACTAATGCTGTCGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACG 28274 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || |||||||| || || || ||| Sbjct 28273 AAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAACGAGCCGACAGCT 28214 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 28213 GCTGCCATAGCCTATGGTCTGGACAAA 28187 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || || ||||| || ||||||||||||||| Sbjct 26613 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATCGAAGTAACCTTCGATATCGATGCC 26554 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || || || ||||| ||| ||||| ||||| Sbjct 26553 AACGGCATCTTGAACGTGTCTGCTGTGGATAA 26522 >seq9782 Length=92745 Score = 98.7 bits (108), Expect = 8e-15 Identities = 355/551 (64%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || || || ||||| | || |||| ||| Sbjct 39640 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 39581 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || || || | ||||| Sbjct 39580 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACT 39521 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || ||||| || || | || | || || |||||||| Sbjct 39520 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 39461 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | ||||| | | | | |||| | || || ||||| Sbjct 39460 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 39401 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || || | ||| || || | | ||| Sbjct 39400 GACATGAAGCACTGGCCGTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 39341 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 39340 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 39286 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGTA 550405 | | || ||||| | | || || | | | || | ||| ||| || ||| || Sbjct 39285 TCACCAAGATGAAGGAGATTGCTGAGGCGTATCTGGGGCGC-AAGGTACAGAATGCTGTC 39227 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || || || || || || || |||||||| || || || || || ||||||||||| Sbjct 39226 ATCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACC 39167 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || |||| |||||||| | |||||||||||||| || || || || || | || ||| Sbjct 39166 ATCACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCCGCGATAGCCTAT 39107 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 39106 GGCCTGGACAA 39096 >seq189893 Length=523 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || ||||||||||| ||| |||| ||| ||||| |||| | ||| | ||||| Sbjct 285 ACCAGATGAAGGGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTCCGGCCATCTT 342 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || || || || ||||| || || || ||||||||||||||||||||||| ||||| | Sbjct 343 CCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 402 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || || || || | | | | ||||| || | |||| Sbjct 403 GGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 462 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| || || || || || ||||| Sbjct 463 TCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4015209470378360