Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq540 111 1e-19 seq3407 91.5 1e-13 >seq540 Length=81673 Score = 111 bits (122), Expect = 1e-19 Identities = 142/189 (75%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || || || || |||| || Sbjct 26891 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGCCCCAAATC 26950 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 26951 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGCGATCCATTAGCAT 27009 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || ||||| | ||||||||||||| ||||| || || || || || | Sbjct 27010 CCCAAATCTTCACACCCTTGGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 27067 Query 30329 ACAG-CAGC 30336 |||| |||| Sbjct 27068 ACAGACAGC 27076 >seq3407 Length=547508 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 433891 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 433832 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 433831 ATGGAGAACCAGGTTTTTTTACCCATTATCAGGGCATTCTGTTTACCT 433784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407291100088172