Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq263127 203 2e-46 seq9782 120 2e-21 seq189893 95.1 8e-14 seq21304 87.8 1e-11 seq12144 86.0 4e-11 >seq263127 Length=2033 Score = 203 bits (224), Expect = 2e-46 Identities = 381/553 (69%), Gaps = 8/553 (1%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| ||||| | ||| | || |||| || Sbjct 1974 TGCAGTTGGCATTGATCTCGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAA 1915 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| |||||||||||||| ||||| | || |||||| |||||| |||| || Sbjct 1914 GGTGGAAATTATTGCCAATGACCAGGGTAACCGCACCACACCAAGCTATGTTGCTTTCAC 1855 Query 474448 TGAAACTGA-ACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTA 474506 || || || | || | ||||| ||||| || || |||| | |||| || || | Sbjct 1854 GGACACAGAGAGAT-TAATTGGGGATGCGGCCAAGAATCAGGTTGCAATGAACCCCACCA 1796 Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566 | || |||||||||| ||| | |||| || |||| ||||||||| | ||| || | Sbjct 1795 ACACAGTTTTTGATGCCAAACGTCTGATCGGGCGTAGGTTTGATGATGCTGTTGTTCAGT 1736 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA- 474625 |||||||| || ||||| || | |||| | |||| || || | || | | || Sbjct 1735 CTGATATGAAGCACTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAG 1676 Query 474626 -GCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | |||||| ||| || || ||| || | || || || | || || |||||| | Sbjct 1675 TGGAATACA--AAGGGGAGACAAAAAGTTTCTACCCAGAGGAAGTGTCCTCCATGGTTCT 1618 Query 474685 AGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAA 474743 | || ||||| ||| || | || || ||| |||| || || | || || Sbjct 1617 GACAAAGATGAAGGAAATTGCAGAAGCGTACCTCGGA-AAGACTGTTACCAACGCTGTGG 1559 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || || || || || || ||||| ||||| || || ||||| |||||||| |||| | Sbjct 1558 TCACAGTGCCCGCTTACTTCAATGACTCTCAGCGACAGGCAACAAAAGATGCTGGAACTA 1499 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| || || ||||| | || || || ||||||||||| || || || ||||||||| Sbjct 1498 TTGCTGGCCTCAATGTACTTCGAATCATCAATGAACCAACTGCTGCTGCTATTGCTTATG 1439 Query 474864 GTCTTGATAAGAA 474876 | | |||||||| Sbjct 1438 GCTTAGATAAGAA 1426 Score = 183 bits (202), Expect = 2e-40 Identities = 462/697 (66%), Gaps = 4/697 (1%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | || || || || || || ||||| | || || || || || | | | Sbjct 1205 CGTCTCCGCACGGCCTGCGAGCGGGCCAAGCGCACCCTCTCCTCCAGCACCCAGGCCAGT 1146 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||||||||| | ||| |||||||| | |||| ||||| ||||| | Sbjct 1145 ATTGAGATTGATTCTCTCTATGAGGGAATTGACTTCTATACCTCCATTACCCGGGCTCGA 1086 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 ||||| || | | |||| || || | ||| | || || || || | | || Sbjct 1085 TTTGAGGAGTTGAATGCTGACCTGTTCCGTGGCACACTGGACCCTGTAGAGAAGGCCCTT 1026 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 ||||| | || || ||||| ||||| ||||||| ||||| | || || ||||| || Sbjct 1025 CGAGATGCCAAGCTGGACAAGTCACAGATCCATGATATTGTCTTGGTGGGTGGTTCTACC 966 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGA 475785 ||||| || || || ||||| | || | | || ||||| ||| || | || | Sbjct 965 AGAATCCCCAAGATTC-AGAAACTTCTGCAAGACTTCTTCAATGGAAAAGAGCTGAACAA 907 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC 475845 || | || || |||||||||||||| ||||| || |||||||| ||||| ||| |||| Sbjct 906 GAGCATTAACCCCGATGAAGCTGTTGCCTATGGTGCAGCTGTCCAGGCAGCCATTCTATC 847 Query 475846 AGGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 || | || | ||||| | | || | | || | || || ||||| ||||| Sbjct 846 TGGAGACA-AGTCTGAGAACGTTCAGGATTTGCTGCTCTTGGATGTCACTCCTCTTTCCC 788 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 | ||| ||||||| | ||| || | |||||| || || | | ||||| | |||| Sbjct 787 TTGGTATTGAAACTGCTGGCGGAGTCATGACTGTCCTCATCAAGCGCAATACCACCATCC 728 Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 | ||| | || | || |||| || ||||| || || | |||| ||| | Sbjct 727 CCACCAAGCAGACACAGACTTTCACCACCTACTCTGACAACCAGCCTGGTGTACTCATTC 668 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATC 476084 | | | |||||||||||| | || || || || ||| ||||||| || | | Sbjct 667 AGGTGTATGAAGGTGAAAGGGCCATGACCAAGGACAACAACCTGCTTGGAAAGTTCGAGC 608 Query 476085 TTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 | ||| || ||||| || ||| | || || ||||| ||||| ||||||||||| || | Sbjct 607 TCACAGGCATCCCTCCAGCACCCCGTGGGGTCCCTCAGATTGAGGTTACTTTTGACATCG 548 Query 476145 ATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||| ||||| || || |||||| ||||| ||||| Sbjct 547 ATGCCAATGGCATCCTCAATGTTTCTGCTGTAGATAA 511 >seq9782 Length=92745 Score = 120 bits (132), Expect = 2e-21 Identities = 362/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || || || || || ||| || || | ||| | || |||| ||| Sbjct 39640 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 39581 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| || || | || || || || || | || ||| Sbjct 39580 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACT 39521 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || |||||||| || | || | || || ||| || Sbjct 39520 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 39461 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || |||||||| || | | ||||| || || | |||||| |||| || || || Sbjct 39460 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACGGTGCAGGCT 39401 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC- 474627 || ||| || ||||| || ||| | || | ||||| || || | | ||| Sbjct 39400 GACATGAAGCACTGGCCGTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 39341 Query 474628 -AATACACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | ||||| | || || | ||| || || | || || ||||| | Sbjct 39340 GAGTACAAG--GGTGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTC 39284 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| | | || ||| | ||||| || | | ||| |||| || || Sbjct 39283 ACCAAGATGAAGGAGATTGCTGAGG-CGTATCTGGGGCGCAAGGTACAGAATGCTGTCAT 39225 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || || || || ||||| || || || || || || |||||||| || | || Sbjct 39224 CACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 39165 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || |||||||| | |||||||| ||||| || ||||||||||| | || ||||| Sbjct 39164 CACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCCGCGATAGCCTATGG 39105 Query 474865 TCTTGATAAGAA 474876 || || ||||| Sbjct 39104 CCTGGACAAGAA 39093 >seq189893 Length=523 Score = 95.1 bits (104), Expect = 8e-14 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621 || |||||||| || ||| |||| ||| || || |||| | ||| | | ||||| Sbjct 285 ACCAGATGAAGGGTGGACTC-CTTTTGAATG-TTGTAGTCAGACAAAGTCCGGCCATCTT 342 Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 | || ||||| |||||||| || || | || ||||||||||||||||||||||| || | Sbjct 343 CCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCT 402 Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741 | ||||| || ||| ||| ||||| || | | || | || || || || |||| Sbjct 403 GGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTT 462 Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||| || || || || Sbjct 463 TCCCCGTAAGGGTCTTCACAAAGATCTG 490 >seq21304 Length=31350 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||||| Sbjct 427 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 486 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| ||||| || ||| || | | || ||||| || Sbjct 487 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 546 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 547 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 579 >seq12144 Length=38566 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || |||||||| || ||| ||| || | || || || | || || | | Sbjct 1356 AGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 1297 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| || ||||| || || | || ||||| || ||||| |||||| Sbjct 1296 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 1237 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || |||||| || ||| ||||| || ||| || | || ||||| Sbjct 1236 TTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTG 1177 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||| || ||||| || || || || Sbjct 1176 ATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTG 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3256753555641872