Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1256 250 3e-61 seq2341 140 4e-28 >seq1256 Length=1756643 Score = 250 bits (276), Expect = 3e-61 Identities = 653/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||||||||| || |||| ||||| || || || |||||| || ||| || | Sbjct 255188 TGTGTCGCAGATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 255129 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 255128 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 255072 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || || || | ||||| Sbjct 255071 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAAGGTGCACCCTTGGACACGT 255012 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || || | Sbjct 255011 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 254952 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || || || ||||| || || | || || | ||| | || ||||| Sbjct 254951 ACTTGT-CACTAGAAGACACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAT 254893 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || |||||||| || || || | ||| || || |||| | ||| ||| Sbjct 254892 AAGTATTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATTAACTTAACTATTTTGCTG 254833 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | |||| || | |||| | || | ||| || || || || || || Sbjct 254832 CTTTGTAATACGTATTCTACAAATCTTCTGCTAACTATAAAATAGGCACTACCAGAAAAA 254773 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 254772 ATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTATGCCTGTGTTTTTTATTTTACCATCA 254713 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| |||||| || Sbjct 254712 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCCGTTTCC 254653 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 254652 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 254593 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||||| ||| ||||| || | || ||| || Sbjct 254592 GGAAAGTCCATGCCACAGAGGTTTATCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGA 254533 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| |||||||||||||| || || || ||||| Sbjct 254532 TCTTTCATGCAGTTAATGTCTGCCTGCACCCGGCTCCAGGAAGCATATACAACACTCTCT 254473 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 254472 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 254414 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 254413 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 254354 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || || || || || Sbjct 254353 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATGGAATAAGCAAT 254294 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || || || | | | | | ||| |||| |||||| | || Sbjct 254293 TGGAAATTCTGCTTCTTCATTGCTGAGAGGCTCCATAATGTATTTTCTGGTCTTGGTGAA 254234 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 254233 GGAGGCACAGTCTGCTGTCATGTTAATATA 254204 >seq2341 Length=450988 Score = 140 bits (154), Expect = 4e-28 Identities = 239/346 (69%), Gaps = 3/346 (1%) Strand=Plus/Minus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| | || ||||| || ||| |||| |||| || | |||||| Sbjct 177445 CTGTGGCGCAGGTACTCCTCCAGGCACAGGATGGCGGCGTCGTCCACCACGGGGTCGAAC 177386 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | ||| || |||||| ||||||| || |||| | Sbjct 177385 TTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCACGTCGCCCACCCCGTAG 177329 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | ||||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 177328 ATGCAGACGGAGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGGGG 177269 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || || || | ||| || ||| | | Sbjct 177268 TCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGTAGGGCGTTCATATCCGAGAGCTGG 177209 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || |||| | || || || ||||| ||||| || | ||||||||||| Sbjct 177208 AACTTGTCATTCTGGGGCAGGGAGCCTGGCACGCCAGGCATGCGGTTGAGGGTGGCCCAG 177149 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | ||| ||||| |||||||| |||||||| | ||| || | ||||| Sbjct 177148 ATGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCAAAGAACT 177103 Score = 116 bits (128), Expect = 4e-21 Identities = 242/358 (68%), Gaps = 12/358 (3%) Strand=Plus/Minus Query 160618 TGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACT 160677 |||| ||||| ||| ||||||| || || ||||| ||||| ||| | | || | Sbjct 176877 TGACTATCTCAGCGTTGGTCTTGATGGGGAAATCGGTGCCGCAGGTGTTGAGGAGATAGT 176818 Query 160678 TCCATTTC---GCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGC 160734 |||| | | |||| | ||||||| |||||| || | |||||||||| | Sbjct 176817 GCCATGGCATGGGGCTCTGCAA---CAGGTCCTGCATGCAGTTGAGGTCTGCCTGCAGCC 176761 Query 160735 GGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAAC 160794 || |||||| || || || || || || || || |||||||||| || ||| | Sbjct 176760 GGGACCAGGAGGCATAGACCACCTTTTCCAGGCGGCTAGCCACAAAGATATTGGGGAAGC 176701 Query 160795 ACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGC---CTTTCGGTCCACGT 160851 | | ||||| || ||| ||| ||| || | ||| ||| | ||| |||| Sbjct 176700 AGGCTACGATGGCCCGCACGGCCTCCTGGAAGAT---AGCCGGGGACTTCCTGTCAACGT 176644 Query 160852 GCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTA 160911 | | ||| || | |||||| || | ||||| || ||| || | || |||||||||||| | Sbjct 176643 GGATGCAGTAGACGTTCTGGGGGGTGTAGAGGGACCTCAGGAGCCGCTCGAACATCTCGA 176584 Query 160912 TCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | || | ||||| || || |||||||| || || ||||| | |||||| | ||||| Sbjct 176583 TGTTGTTGTGGATGACCATGGAGTAGGCAATGGGGAACTCTGCCTCCTCCTGGCTCAG 176526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575297319812640