Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq263127 291 6e-73 seq9782 111 1e-18 seq17065 89.7 4e-12 seq3277 87.8 1e-11 >seq263127 Length=2033 Score = 291 bits (322), Expect = 6e-73 Identities = 957/1470 (65%), Gaps = 22/1470 (1%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| ||||| || || ||||||||||| | ||||| || || ||||| Sbjct 511 TTATCTACAGCAGAAACATTGAGGATGCCATTGGCATCGATGTCAAAAGTAACCTCAATC 570 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||||||||| | | || || ||||| ||| | | || |||| || || Sbjct 571 TGAGGGACCCCACGGGGTGCTGGAGGGATGCCTGTGAGCTCGAACTTTCCAAGCAGGTTG 630 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATT 281595 || || || || | | |||||| || | | || || |||| | ||| || || Sbjct 631 TTGTCCTTGGTCATGGCCCTTTCACCTTCATACACCTGAATGAGTA-CACCAGGCTGGTT 689 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 || || || || || || | |||| | | || || || || || || | | | Sbjct 690 GTCAGAGTAGGTGGTGAA-AGTCTGTGTCTGCTTGGTGGGGATGGTGGTATTGCGCTTGA 748 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||| | || ||||| ||||| | |||||| ||||||||||||||||| | Sbjct 749 TGAGGACAGTCATGACTCCGCCAGCAGTTTCAATACCAAGGGAAAGAGGAGTGACATCCA 808 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || |||| || ||| | | ||| ||||| ||||| || | || Sbjct 809 AGAGCAGCAAATCCTGAACGTTCTCAGACTTGTCTCCAGATAGAATGGCTGCCTGGACAG 868 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| |||||||||||||| || |||| | | || || | ||| ||||||| Sbjct 869 CTGCACCATAGGCAACAGCTTCATCGGGGTTAATGCTCTTGTTCAGCTCTTTTCCATTGA 928 Query 281835 AAAAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | || | | ||||||| ||| | ||| || || | | || || || || || ||| Sbjct 929 AGAAGTCTTGCAGAAGTT-TCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAAGACA 987 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || ||||| | |||||| || ||||| || | ||| | | || || || || || Sbjct 988 ATATCATGGATCTGTGACTTGTCCAGCTTGGCATCTCGAAGGGCCTTCTCTACAGGGTCC 1047 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | | |||| ||| | | | || || ||| ||| | |||| | | | Sbjct 1048 AGTGTGCCACGGAACAGGTCAGCATTCAACTCCTCAAATCGAGCCCGGGTAATGGAGGTA 1107 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 | | |||||||| || | | |||||||| ||||| | | || || || || Sbjct 1108 TAGAAGTCAATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAG 1167 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGA 282129 || | || || || || || || || || | || | || | ||| | | || | Sbjct 1168 AGGGTGCGCTTGGCCCGCTCGCAGGCCGTGCGGAGACGGCGGACAGCTCTCTTGTTCTCA 1227 Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACAAGAC 282188 |||| ||| | || | |||| |||||| || ||| | | || | || | | Sbjct 1228 CTGATG----TCTTTCTTGTGCTTTCGCTTGAACTCAGCAATGAAATGAT-TGACCATTC 1282 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | || ||||||||||| || || || | || | ||| | || | | | || | |||| Sbjct 1283 GGTTGTCAAAATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTTGATTTGACCTCAAAAA 1342 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 |||||| |||| || | | | |||||| || ||||| |||| |||||||| | Sbjct 1343 TTCCATCCTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCCAAGTCAAAAATGA 1402 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | |||||| |||| | || ||||| | ||||| |||| |||||||||||||| Sbjct 1403 GCACATTCCTTTCAGCTCCGACCTTCTTATCTAAGCCATAAGCAATAGCAGCAGCAGTTG 1462 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 ||||||| || |||| | ||||| || |||||||| |||| |||||||| || || | Sbjct 1463 GTTCATTGATGATTCGAAGTACATTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCT 1522 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 ||| || || || || || || || || || || | || || | || || |||| Sbjct 1523 GTCGCTGAGAGTCATTGAAGTAAGCGGGCACTGTGACCACAGCGTTGGTAACAGTCTTTC 1582 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | || || ||| ||| ||||| || | | || ||| || || | || |||| Sbjct 1583 CGAGGTACGCTTCTGCAATTTCCTTCATCTTTGTCAGAACCATGGAGGACACTTCCTCTG 1642 Query 282549 G--AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 282606 | |||| | | ||| | | |||| ||| |||| | | || | || | Sbjct 1643 GGTAGAA-ACTTTTTGTCTCCCCTTTG-TATTCCACTTGGACCTTGGGCCTGCCTGCATC 1700 Query 282607 ATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 282666 ||| | || | || ||||| | |||||||| || |||||| |||| ||| Sbjct 1701 ATTCACCACCATGAAGGGCCAGTGCTTCATATCAGACTGAACAACAGCATCATCAAACCT 1760 Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726 | || || | ||||| |||||||||| || ||||| || || | |||| | |||| Sbjct 1761 ACGCCCGATCAGACGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGATT 1820 Query 282727 TTTGGCTGCATCTCCAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785 ||||| ||||| ||||| | || | ||||| || || || | |||||| ||| || | Sbjct 1821 CTTGGCCGCATCCCCAATTA-ATCTCTCTGTGTCCGTGAAAGCAACATAGCTTGGTGTGG 1879 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 |||| ||||| || ||||| ||||||||||| || || |||| || | ||||| |||| Sbjct 1880 TGCGGTTACCCTGGTCATTGGCAATAATTTCCACCTTTCCATGCTGGAAGACACCCACAC 1939 Query 282846 AACTAAAAGTTGTTCCTAAATCAATACCAA 282875 | | || || || | |||||| |||| Sbjct 1940 AGGAGTAGGTGGTGCCGAGATCAATGCCAA 1969 >seq9782 Length=92745 Score = 111 bits (122), Expect = 1e-18 Identities = 279/418 (67%), Gaps = 6/418 (1%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | || || || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 38179 CGGCACTGACGTTCAGGATACCATTGGCATCTATGTCAAAAGTGACCTCGATCTGGGGGA 38238 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| ||| | | |||| | ||||| || || || | Sbjct 38239 CTCCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 38298 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGA 281601 | || | | ||||||||| | | |||| || | || | | || || ||||| Sbjct 38299 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGA 38356 Query 281602 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || || || |||| ||| ||| |||||| || ||||| | | || | | Sbjct 38357 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTAGGAATGGTGGTGTTACGCTTGATGAGAG 38415 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 38416 CAGTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 38475 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || || | || ||| | | || | || ||||||||||| | |||||||| Sbjct 38476 GCAGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCAC 38535 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 | || |||||||| ||||||||||| | | | || || | ||| |||||||| || Sbjct 38536 CGTAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 38593 >seq17065 Length=79502 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 || || ||| | || || || ||||| || || ||| | ||| | | | ||||||||| Sbjct 53578 GTGGCTACAGTGGCGTTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 53519 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 53518 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 53459 Query 131300 GG 131301 || Sbjct 53458 GG 53457 >seq3277 Length=206865 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || |||||||||||||||| ||||| | ||||||||| | || |||||||| || || Sbjct 52133 GGCTCATTAATAATTCTCATCACATTCAACCCAGCAATTGTCCCAGCATCTTTTGTAGCC 52074 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | || | ||||||||| || || || ||||||| ||| |||| Sbjct 52073 TGACGCTGAGCATCGTTAAAGTAGGCTGGCACAGTAACAACAGCAT 52028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3727553053254264