Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12144 147 2e-30 seq109229 132 5e-26 seq21304 127 2e-24 seq9972 96.9 3e-15 >seq12144 Length=38566 Score = 147 bits (162), Expect = 2e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 430 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCT 372 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| ||||| || |||||||||||||| ||||| Sbjct 371 GCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCT 312 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | ||||| ||||| ||||||| || |||| ||||| ||| ||||||| Sbjct 311 TTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGG 252 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || ||||| || |||||||| Sbjct 251 TCAGGGTCTTTACAAAGATCTGCAT 227 Score = 140 bits (154), Expect = 3e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || |||||||| | || ||| | || || |||| Sbjct 1114 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCA-TCTTCCAGCT 1056 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || |||| |||||| ||||| || |||||||||||||| ||||| Sbjct 1055 GCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCT 996 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||||| Sbjct 995 TTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGG 936 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||| ||||||||| Sbjct 935 TCAAGGTCTTCACGAAGATCTGCATG 910 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 658 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCT 600 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || |||| |||||| ||||| || |||||||||||||| ||||| Sbjct 599 GCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCT 540 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | ||||| ||||| ||||||| || || | ||||| ||| || |||| Sbjct 539 TTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCGG 480 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 479 TCAAGGTCTTCACAAAGATCTGCAT 455 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| || || ||| | | | || || |||| Sbjct 886 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCT 828 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || |||| |||||| ||||| || || ||||||||||| ||||| Sbjct 827 GCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATACCTTCCTTGTCCTGGATCT 768 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| ||||| ||||||| || |||| ||||| ||||||||| | Sbjct 767 TCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTGCCAG 708 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||||||| Sbjct 707 TCAGGGTCTTCACAAAGATCTGCATG 682 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 1335 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 1277 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| ||||| || |||||||||||||| ||||||| ||| Sbjct 1276 GGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTT 1217 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || |||| ||||| ||| || |||||||| || Sbjct 1216 CACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGT 1157 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1156 CTTCACAAAGATCTGCAT 1139 >seq109229 Length=213 Score = 132 bits (146), Expect = 5e-26 Identities = 145/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || ||| | | | ||||| ||||| ||||||||| | || Sbjct 213 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGTTTGCCCGCGAATAT 155 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 |||| ||||||||| || ||||||||||||||||| |||||| ||||| | ||| Sbjct 154 CAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTC 95 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||| ||||||| || || | |||| ||| ||||| ||||| || || ||||| Sbjct 94 GATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 35 Query 133652 AATCTGCATG 133661 ||||||||| Sbjct 34 GATCTGCATG 25 >seq21304 Length=31350 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| | ||| | ||| || ||||||||||| Sbjct 158 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 217 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || ||||| |||||||| |||||| |||| Sbjct 218 GCAAAGATCAGCCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 277 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 278 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 337 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 338 TTCACAAAGATCTGCATG 355 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 386 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 445 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| || || || |||||||||||||| |||||| |||| Sbjct 446 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 505 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 506 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTC 565 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 566 TTCACAAAGATCTGCAT 582 >seq9972 Length=29549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||||||||||||||||| |||| ||||| |||||| Sbjct 11951 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 11892 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | |||||| | ||| ||||||||||||||||| Sbjct 11891 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGG 11854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481811226275360