Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1256 152 6e-32 seq2341 120 4e-22 >seq1256 Length=1756643 Score = 152 bits (168), Expect = 6e-32 Identities = 581/903 (64%), Gaps = 22/903 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || || || || || ||||| Sbjct 255099 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 255040 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | ||| || || || |||| |||||||| || ||||| Sbjct 255039 GGTGGGTAAGGTGCACCCTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTG 254980 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || || ||||||| |||| || | ||| || || || || Sbjct 254979 GCCAGTGCATTCATGTCAGAAACATCATACTTGT-CACTAGAAGACACTGCACCTGGGAC 254921 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || ||||| | || ||| ||||| || || || || || | Sbjct 254920 TTCAGGGATTCTCTGAATTGTTGCCCATAAGTATTCATCTGGGCTGTAAGTATCTTTTGC 254861 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTATAG-AAT--GTAAGAGACGTAGGACCT 162455 |||||| || |||| | || |||| | | | ||| ||| || | || Sbjct 254860 CCACTCAATTAACT---TAACTATTTTGCTGCTTTGTAATACGTATTCTACAAATCTTCT 254804 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || ||||| || || ||||||||||| | || | | | ||| || ||| ||| Sbjct 254803 GCTAACTATAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGCTGTTT 254744 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || || ||||||| | Sbjct 254743 GTCTATGCCTGTGTTTTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTAC 254684 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 254683 TTCTTTA----TAAACAGGCATTTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 254628 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 254627 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 254568 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || || ||||| | | ||||| | || |||| Sbjct 254567 TCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCT 254508 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || || ||||| || || || || || ||||| ||| ||| | ||||||||| | Sbjct 254507 GCACCCGGCTCCAGGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 254448 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || || | || | || || ||| | | Sbjct 254447 CAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 254391 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 254390 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 254331 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || ||||| || || || || || || || || | Sbjct 254330 TCTCAATTTTGTGATAAACCACTATGGAATAAGCAATTGGAAATTCTGCTTCTTCATTGC 254271 Query 162989 TGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGT 163048 |||||| | | ||| ||| || | | | | || | |||||||| | ||||||| Sbjct 254270 TGAGAGGCTCCATAATGTATTTTCTGGTCTTGGTGAAGGAGGCACAGTCTGCTGTCATGT 254211 Query 163049 TAA 163051 ||| Sbjct 254210 TAA 254208 >seq2341 Length=450988 Score = 120 bits (132), Expect = 4e-22 Identities = 258/380 (68%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGC--ACCATCTCTAGATTGGTCTTAAGGG 162667 ||||| || |||| || |||||||| | ||| || ||||| |||||||| | || Sbjct 176908 CTGTTCCGGCCCCGCAGCGCCTTCAG--GGCGCTGACTATCTCAGCGTTGGTCTTGATGG 176851 Query 162668 GAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGA 162726 | || |||||||||||| || | | ||| | ||| | | | || | | ||| Sbjct 176850 GGAAATCGGTGCCGCAGGTGTTGAGGAGATAGTGCCATGGCATGGGGC-TCTGCAACAGG 176792 Query 162727 TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCC 162786 ||||| | ||||| || || ||||| | || ||| || || || || || | ||| Sbjct 176791 TCCTGCATGCAGTTGAGGTCTGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCC 176732 Query 162787 AACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAG 162846 | | | || ||||||| |||| ||| || | || || || ||||||| | Sbjct 176731 AGGCGGCTAGCCACAAAGATATTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCCTGG 176672 Query 162847 AACAT---CGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 || || |||| | ||||| || ||||| | |||||| | ||||| |||| |||| Sbjct 176671 AAGATAGCCGGGGAC---TTCCTGTCAACGTGGATGCAGTAGACGTTCTGGGGGGTGTAG 176615 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 | || |||||| | | |||||||||||| || || | ||| | || || || || || Sbjct 176614 AGGGACCTCAGGAGCCGCTCGAACATCTCGATGTTGTTGTGGATGACCATGGAGTAGGCA 176555 Query 162964 ATGGGGAACTCAGCCTCCTC 162983 ||||||||||| |||||||| Sbjct 176554 ATGGGGAACTCTGCCTCCTC 176535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576506081734400