Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq9972 104 2e-17
seq189893 96.9 3e-15
seq12144 89.7 5e-13
>seq9972
Length=29549
Score = 104 bits (114), Expect = 2e-17
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| ||| ||||| | ||||| ||||||||||| ||| ||||| || |||||||||
Sbjct 11951 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 11892
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614
|| ||||| ||||| | ||||||| | ||||||||||| |||||||||
Sbjct 11891 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGCGTGCCGGTCTC 11842
>seq189893
Length=523
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970
||| |||| ||| | | | ||||| ||||||||||||||||| || || || |||
Sbjct 281 CAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTCCGGCCATC 340
Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
||| ||||| ||||| | | |||| || | ||| ||||| ||||| || ||||| |||||
Sbjct 341 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 400
Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090
|| || || | | ||| | ||| || | || || || |||| ||| | ||
Sbjct 401 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 460
Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| || || || || || | || ||||||||
Sbjct 461 TTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493
>seq12144
Length=38566
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
|| ||||| || | ||| | | | || || || || |||||||||||| || ||| ||
Sbjct 445 CAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 386
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
|||||| ||||| || |||| | |||| || | ||| ||||| || || ||||||||
Sbjct 385 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTC 326
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
|| || || ||| |||| | || | || || | ||||| || |||| ||
Sbjct 325 CTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGT 266
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || || || ||||| || |||| || ||||||||
Sbjct 265 GATGGTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 227
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| || || || |||||||||||| || ||| || |||||| ||||| || |||| |
Sbjct 1332 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 1273
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| ||||| || || |||||||| || || || ||| ||||
Sbjct 1272 AAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACA 1213
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||| || |||| || | || ||||| ||||| || ||
Sbjct 1212 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTC 1153
Query 132110 ATGAAAATCTGCAT 132123
| || ||||||||
Sbjct 1152 ACAAAGATCTGCAT 1139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475024299179040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |