Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq89524 123 8e-25 seq89407 123 8e-25 seq29493 123 8e-25 seq10945 116 1e-22 seq15336 114 4e-22 seq25046 113 1e-21 seq12957 113 1e-21 seq84673 98.7 3e-17 seq21304 98.7 3e-17 seq1974 98.7 3e-17 seq1445 98.7 3e-17 seq342 91.5 5e-15 >seq89524 Length=1477 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 424 GGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 483 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 484 CCCGGGCTTCAGC 496 >seq89407 Length=2273 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1766 GGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 1707 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 1706 CCCGGGCTTCAGC 1694 >seq29493 Length=17891 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 10743 GGCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAA 10684 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 10683 CCCGGGCTTCAGC 10671 >seq10945 Length=68598 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 64741 GCTGGAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 64682 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 64681 CCGGGCTTCAGC 64670 >seq15336 Length=175689 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 135760 GGCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 135701 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 135700 CCCGGGCTTCAGC 135688 >seq25046 Length=22505 Score = 113 bits (124), Expect = 1e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 7462 TTAGGGCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 7403 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| ||| ||||||||| Sbjct 7402 CAATCCCAGGCTTCAGC 7386 Score = 104 bits (114), Expect = 7e-19 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 || |||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 7360 TGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCC 7301 Query 2831 GGGCTTCAGC 2840 ||||||||| Sbjct 7300 AGGCTTCAGC 7291 >seq12957 Length=24753 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 6730 GCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 6671 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 6670 CCGGGCTTCAGC 6659 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 12161 GCTGGAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 12102 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 12101 CCGGGCTTCAGC 12090 >seq84673 Length=1170 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 704 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 763 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 764 CCGGGTTTCGGC 775 >seq21304 Length=31350 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5344 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5285 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5284 CCGGGTTTCGGC 5273 >seq1974 Length=93044 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 56512 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 56571 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 56572 CCGGGTTTCGGC 56583 >seq1445 Length=459653 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 313103 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 313044 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 313043 CCGGGTTTCGGC 313032 >seq342 Length=471314 Score = 91.5 bits (100), Expect = 5e-15 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| |||||||||| ||||||| |||||||||||||||||| ||||| || |||| | Sbjct 29808 GGCTGGAGTAGCTCAGCCGGGAGAGGATTAGACTGAAGATCTAACGGTCCTTGCTTCAGC 29867 Query 2828 CCCGGGCTTCAGC 2840 ||||| ||||||| Sbjct 29868 CCCGGCCTTCAGC 29880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15803424468780