Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq12144 114 1e-20 seq189893 104 2e-17 seq21304 104 2e-17 seq9972 98.7 1e-15 >seq12144 Length=38566 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 453 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 394 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||||||||| || Sbjct 393 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 334 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| || || || | ||||| | || || Sbjct 333 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 274 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || ||||| || ||||| | || || || || || ||||| ||| Sbjct 273 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTTG 223 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 681 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 622 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | |||||||||||| || Sbjct 621 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 562 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| || || || | ||||| | || || Sbjct 561 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 502 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| || || || || || || ||||| Sbjct 501 TCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 455 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || || |||||||| || |||||||||||| Sbjct 1365 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 1306 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||||||||| || Sbjct 1305 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGA 1246 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| || || || | ||||| | || || Sbjct 1245 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 1186 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| |||||||| | || || || || || ||||| Sbjct 1185 TCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 1139 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||||||||| || |||||||| || Sbjct 1137 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCTGAG 1078 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| || || |||| | |||||||||||| || Sbjct 1077 AGGGTACGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 1018 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| || || || | ||||| | || || Sbjct 1017 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACC 958 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| || || || ||||| || ||||| Sbjct 957 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAGATCTGCAT 911 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||||||||| || ||||||||||| Sbjct 909 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 850 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | |||||||||||| || Sbjct 849 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 790 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||| || || | ||||| | || || Sbjct 789 ATACCTTCCTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACC 730 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| || || | || || || || || ||||| Sbjct 729 TCGAGGGTGATGGTTTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 683 >seq189893 Length=523 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || | Sbjct 276 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTCCG 334 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| || || ||||| |||| | ||||||||| || || || ||||| Sbjct 335 GCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTC 394 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||||| || | ||| || ||||| || Sbjct 395 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGT 454 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | || || || || || ||||| Sbjct 455 GATGGTTTTCCCCGTAAGGGTCTTCACAAAGATCTGCAT 493 >seq21304 Length=31350 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||| ||||| || |||||||||||| | Sbjct 128 CCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 187 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| ||||| |||| | ||||||||| ||||| Sbjct 188 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGA 247 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| || | ||||| | || || Sbjct 248 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 307 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 308 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 354 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||| ||||| || ||||||||||| Sbjct 356 CCACCCCTCAGGCGCAGCACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 415 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 416 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 475 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | || || Sbjct 476 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 535 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || || || || |||||||| Sbjct 536 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 585 >seq9972 Length=29549 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 ||| || ||||| | ||| | || ||||| | |||||||||||||||||||||| |||| Sbjct 11820 CGCTATCATCGAGTCTCAGACAGAGACCGGCACGCCGTACATGCTGTACAAAGACTCTTG 11879 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || |||||||| ||| |||| ||||| |||||||||||||| | || Sbjct 11880 CAACCGGAAGAGCAATCAGCAGAACTTGGGGACCATCAAATGCAGCAATCTGTGTACAGA 11939 Query 8352 AATTGTACAGTA 8363 ||| || |||| Sbjct 11940 AATAGTGGAGTA 11951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503715650757280