Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq16573 138 2e-27
seq6632 129 8e-25
seq118744 109 8e-19
seq114383 86.0 9e-12
seq9972 84.2 3e-11
>seq16573
Length=30794
Score = 138 bits (152), Expect = 2e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| |
Sbjct 23956 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 24015
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 24016 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 24075
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | |||||| ||
Sbjct 24076 CAACCACTCTCTCACC 24091
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 26488 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTCACACAAGGCATTGTTTCAATAGCATTA 26547
Query 39854 AA 39855
||
Sbjct 26548 AA 26549
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/123 (76%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
||| ||||| | ||| |||||||| || ||||||||||| || ||||||||||||| |
Sbjct 28933 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 28992
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
|||| || || ||||||||||| | | ||| || ||||||| | | || ||||
Sbjct 28993 CATGAGAGATGAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 29052
Query 40107 ATA 40109
|||
Sbjct 29053 ATA 29055
>seq6632
Length=32526
Score = 129 bits (142), Expect = 8e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||||||| || | ||| |||||||| |||||||||||||||| || | || |
Sbjct 9694 CCTCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9635
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | |||||||| ||||||||||| || ||||| ||||||||||| |
Sbjct 9634 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 9575
Query 39759 CAACAA 39764
| ||||
Sbjct 9574 CTACAA 9569
Score = 96.9 bits (106), Expect = 5e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370
||||| |||||||| | || |||||||| || |||||||| || ||||| || ||||||
Sbjct 10975 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 10916
Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418
|||| || || ||||||||||| ||||| ||||| ||| || |||
Sbjct 10915 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 10868
>seq118744
Length=225
Score = 109 bits (120), Expect = 8e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798
|| || || ||||| || ||||| | || | || ||||| ||||| |||||||||||
Sbjct 3 GGGCGCTTGTTTCCACCTTGATCCACATAGCGAGCTGTGTTGTTATATACTCTCAGCATT 62
Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA 69858
|| | || |||||||| || ||||| || |||| || || || || | || ||||||
Sbjct 63 GGCACAAGGCCATTAGAATTGCCATTAGTCCCAGCGATGTAGCTACCAGTGGCCCGAATA 122
Query 69859 TTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAAT 69918
||| | || | ||| ||||| || || ||||| || | ||||| | ||||
Sbjct 123 CAACTCACAGCAACACCAATTCCCCCAGCGGACTTAGAAATCAAGGCACACTGCTTCAGA 182
Query 69919 GTGTCATATATACCCTCTATGCTATCATCTATCAT 69953
|| ||||| || || || ||||| |||||| ||||
Sbjct 183 GTATCATAAATTCCTTCAATGCTGTCATCTTTCAT 217
>seq114383
Length=219
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCTTGT--GACATAACTCCCATTTT 39327
||| |||||| |||| || | |||| || ||| || | ||||| |||||||| |
Sbjct 151 TTAGAAGTCAGCATCCAAGGTAAAAGAGTTCTCTGTCGAATTCGACATGACTCCCATCCT 92
Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387
|| || || || || || ||||| || || || || || ||||| | ||| ||||||||
Sbjct 91 CTGATACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAGATATTTTC 32
Query 39388 CATGAAATCAAACGGATT 39405
|||||| |||||||||||
Sbjct 31 CATGAAGTCAAACGGATT 14
>seq9972
Length=29549
Score = 84.2 bits (92), Expect = 3e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
||||| || || || | ||||| || ||||| || ||||||||||| || || | |||
Sbjct 16338 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 16279
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822
|| ||||| |||| || |||||||| || ||||||||||| ||
Sbjct 16278 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 16235
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || || |||||| || | || || || || || || |
Sbjct 18652 TCCACCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 18593
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || || || |||||||||||||| ||||| ||||| ||||| || | ||| | |
Sbjct 18592 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 18533
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | || ||||| | |||||| | | || || | ||||| ||||
Sbjct 18532 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 18482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 684621702804960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |