Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6632 111 1e-19 seq114383 89.7 4e-13 >seq6632 Length=32526 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | |||| || || ||||| ||||| || || |||||||| |||||| Sbjct 7484 CAAGAAGTACAAATCACAGAGGCTCGGTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 7543 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || ||||| ||||||||||||||||| || || || ||||| |||||| | |||| | Sbjct 7544 ATACATTCAGAAATGTACAGTCTTCTCATTGACACCTACATTAAAGATTCTAAAGAGAGG 7603 Query 44033 CATCGATTGTTTAATG 44048 | ||||||| ||| Sbjct 7604 TTTGTATTGTTTGATG 7619 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||||| |||||||| ||||||||||| || || ||||| Sbjct 9559 GGAGAACGTGTTGTAGCTTTTGCAGCAGTGGAAGGAATTTTCTTTTCTGGCTCTTTTGCA 9618 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| || |||||||| | || ||||| ||||| | Sbjct 9619 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTT 9678 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 9679 ATCAGTAGAGATGA 9692 >seq114383 Length=219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| |||||||| || ||||||||||| || | ||||| || |||||||| ||| Sbjct 8 GTAGAAAATCCGTTTGACTTCATGGAAAATATCTCACTAGAAGGAAAGACAAACTTCTTT 67 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || || || || |||||| | ||||| |||||| Sbjct 68 GAGAAGCGAGTAGGCGAGTATCAGAGGATGGGAGTCATG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396165734115820