Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq16573 89.7 6e-13 seq755 86.0 7e-12 seq24593 82.4 8e-11 >seq16573 Length=30794 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 23958 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 24017 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 24018 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 24077 Query 74892 AC 74893 || Sbjct 24078 AC 24079 >seq755 Length=267982 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| || ||| ||| | ||||| || || Sbjct 108313 GTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCGCCATGAAGCCTGGTACCAAACTGA 108254 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||| ||| |||||||| ||||||||||||||| Sbjct 108253 CCAATAGGTTGTAGCAGATTAACATTGTTACTGCCAACAAAGTTCTGAGCCAAGTTGACA 108194 Query 117425 ATCGT 117429 || || Sbjct 108193 ATAGT 108189 >seq24593 Length=33273 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||||| || |||||||| Sbjct 22394 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCGTGCAGCCTTGTGCCAAACTGA 22453 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| || | |||||||||||| ||||||||| |||||||| || || | | Sbjct 22454 CCGATAGGCTGTAGCAAGTTGAGGTTGTTACTGCCCACGAAGTTCTGAGCTAAGTTAATA 22513 Query 152149 ATCGT 152153 || || Sbjct 22514 ATAGT 22518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545394016967200