Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2341 212 8e-50 seq7893 150 2e-31 seq173100 122 1e-22 >seq2341 Length=450988 Score = 212 bits (234), Expect = 8e-50 Identities = 657/999 (66%), Gaps = 36/999 (4%) Strand=Plus/Plus Query 13611 TACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGT-GAG 13669 ||| ||||||||||| |||||| | |||| || || | | || | || | ||| Sbjct 176463 TACCTGAACATGACGAAGGACTGCAGGAGCTTC---AAGGAGACGCGGCAGTTCATCGAG 176519 Query 13670 GCCCC--TGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 ||| |||||| ||| |||| ||||| ||||| |||||||| || || |||||| || Sbjct 176520 TTCCCACTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAAC 176579 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 || ||||||||||||||||| ||||||||| || ||||| |||| |||||| |||||||| Sbjct 176580 AACATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGC 176639 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCC---GGGGCGTCTCGGCCATCGCC 13844 ||||||| ||| |||||| || | | || ||| || ||| |||||||| Sbjct 176640 ATCCACGTTGACAGGAAGTCC-CCGGCTA--TCTTCCAGGAGGCCGTGCGGGCCATCGTA 176696 Query 13845 AGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGG 13904 |||||||| || | |||| ||| ||| | | ||||| || | ||||||| Sbjct 176697 GCCTGCTTCCCCAATATCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGG 176756 Query 13905 AGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGT 13962 || ||||||| ||||||| ||||||| ||||||| | | ||| | || | Sbjct 176757 TCCCGGCTGCAGGCAGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCA--T 176814 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || || || |||||| ||||| | || ||||| ||||||||||| ||||| | Sbjct 176815 GGCACTATCTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAG 176874 Query 14023 TGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAA 14080 | | || |||||||| ||| | ||| |||| | ||||| || || | | | | | Sbjct 176875 TCAGCGCCCTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCT--CGGA 176932 Query 14081 CCACAAGC-TGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCA 14139 | ||||| |||| ||| | | ||| | |||| ||| | | | | Sbjct 176933 CTCCAAGCGGGCACGCTGGCAGTATCA-CCACATAGTGG-----GGCAG-TTCATCTCCC 176985 Query 14140 ACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTT 14199 || | || | || ||||| || | || |||||| || |||| || || | Sbjct 176986 GGACAGCCACAGAGAAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAATGCGT 177045 Query 14200 ACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC 14259 || | || ||||| |||| |||||| | | | || | || || || | |||| Sbjct 177046 ACATCGCAGTCACACGGGCCTTCGTGCAGTACATCTTTGAGAAC---CCCACAACACTGC 177102 Query 14260 ---TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGC 14316 || | | ||| | ||||||| |||||||| ||||||||| | ||||||||| | Sbjct 177103 AGTTCTTTGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACATCTGGGCCACCCTCA 177162 Query 14317 AGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACA 14376 | | ||| || ||| || | ||| | | ||||| | | |||||| | Sbjct 177163 ACCGCATGCCTGGCGTGCCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTCGGATA 177222 Query 14377 TGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGG 14436 || ||| | | | ||||||||||| ||| ||||| || || || || | Sbjct 177223 TGAACGCCCTACCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAAGGGCG 177282 Query 14437 CCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCG 14496 | | |||||||| ||| |||| ||| | | || ||||||||| |||| |||| Sbjct 177283 CGCCCTACCCGCCCTGCACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCG 177342 Query 14497 ACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG 14555 ||||| ||| || ||| | | ||||| || ||||||||||||||| || | | Sbjct 177343 ACGTGCCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCGTGGTG 177401 Query 14556 GACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||||| |||| | | || ||||| ||| || ||||| Sbjct 177402 GACGACGCCGCCATCCTGTGCCTGGAGGAGTACCTGCGC 177440 >seq7893 Length=49144 Score = 150 bits (166), Expect = 2e-31 Identities = 440/662 (66%), Gaps = 43/662 (6%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || || |||| || |||| || || ||| | |||||| ||| ||| || |||||| Sbjct 18991 CCTCTCAGCC--GAGGAGGCCGCCTTCCCCGTTGCCTAC---ATCATGACCCTGCACAAG 18937 Query 13731 A---TCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 | |||| |||||||| ||| | ||||| | ||| || || ||| |||||||| Sbjct 18936 GAGTTTGAGACCTTCGAGCGGCTCTTCAGGGCAGTGTACATGCCCCAAAACATCTACTGC 18877 Query 13788 GTCCACGTGGACTCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCG 13842 |||| |||||| ||||| | |||| | | ||||| |||| |||| | | | Sbjct 18876 ATCCATGTGGACACCAAGGCACCGGCCCC-----CTTCCGGCAGGCGGTGCGGCGCCTGG 18822 Query 13843 CCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCT 13902 | |||||||| |||| ||| ||| |||| | | ||||| |||||| | Sbjct 18821 TGGGCTGCTTCCCCAACGCCTTCCTCGCCTCCCGGGCGGAGCGGGTGGTCTACGGCGGCG 18762 Query 13903 GGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGT 13962 ||| ||| |||||||||| ||||||| |||||| ||||| |||| | Sbjct 18761 CCTCCCGCCTGCGGGCCGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCT 18702 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || | |||||||||||| ||||| ||||||||| | |||||||||| |||||||| Sbjct 18701 GGCGCTACCTGCTCAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCG 18642 Query 14023 TGCGGGCGCTGAAGGCCCTGGGCGGCAAGAAC----GCCCTGGAGAGCGAGGGCATGCCC 14078 | | | ||| |||| | | || || |||||| ||| || | || | || ||| Sbjct 18641 TCCAGCTGCTCAAGGGCTTTGGGGGGAAGAACATCACCCCCGGGGTGC--TGCCA--CCC 18586 Query 14079 AACCACA-AGCTGCACCGCATCAGGAAGAGGCAC---GTGGTGGCCAG-----CGGCGGC 14129 ||||| |||| ||||| | | |||| | || |||||| || | Sbjct 18585 CCCCACATCACTGC-CCGCACAAAATATGTGCACAGGGAGGGGGCCAGGCACAATGCCTC 18527 Query 14130 GTGG-TGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGC 14188 | || || ||| |||| || | ||||||| || ||||| | || || |||||| Sbjct 18526 GGGGCTGATCACCACCTGCCTGCACAAGGCGCCCCCGCCCCACAACATGACCATCTACTT 18467 Query 14189 GGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGC- 14247 || || ||| |||| ||||||||| |||||||| ||||| || ||||| | | Sbjct 18466 TGGCTCTGCGTACATTGCCGTCACCCGGCCCTTCGTGGAGTTCGTGCTGCAGGACCAACG 18407 Query 14248 --CGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTG 14305 | | | ||||| ||| |||| ||||||||| |||||||| || |||||| | || Sbjct 18406 CGCCATCGATCTGCT--GGCA-TGGTCCGAGGACACCTACAGCCCTGATGAGCACTTCTG 18350 Query 14306 GG 14307 || Sbjct 18349 GG 18348 >seq173100 Length=415 Score = 122 bits (134), Expect = 1e-22 Identities = 245/359 (68%), Gaps = 16/359 (4%) Strand=Plus/Minus Query 13704 GCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTCCTGAGGGCC 13760 |||||| ||| ||| || |||||| | |||| |||||||| ||| | ||||| Sbjct 413 GCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGACCTTCGAGCGGCTCTTCAGGGCA 357 Query 13761 ATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CGGCGACGAGT 13818 | ||| || || ||| |||||||| |||| |||||| ||||| | |||| | Sbjct 356 GTGTACATGCCCCAAAACATCTACTGCATCCATGTGGACACCAAGGCACCGGCCCC---- 301 Query 13819 TCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACC 13875 | ||||| |||| |||| | | | | |||||||| |||| ||| ||| || Sbjct 300 -CTTCCGGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCCCCAACGCCTTCCTCGCCTCCC 242 Query 13876 GGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGT 13935 || | | ||||| |||||| | ||| ||| |||||||||| ||||||| Sbjct 241 GGGCGGAGCGGGTGGTCTACGGCGGCGCCTCCCGCCTGCGGGCCGACCTCCACTGCATGA 182 Query 13936 CGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACT 13995 |||||| ||||| |||| ||| | |||||||||||| ||||| ||||| Sbjct 181 GAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGCTCAACACCTGCGGCCAGGACT 122 Query 13996 TCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 |||| | |||||||||| ||||||||| | | ||| |||| | | || || |||||| Sbjct 121 TCCCCTTGAAGACCAACCGGGAGATCGTCCAGCTGCTCAAGGGCTTTGGGGGGAAGAAC 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656545894896640