Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06-
06] 266,364 sequences; 1,346,185,690 total letters
Query= NC_028699.1
Length=40740
Score E
Sequences producing significant alignments: (Bits) Value
seq134544 354 2e-93
seq100757 223 9e-54
seq117179 208 2e-49
seq149207 116 1e-21
seq116084 114 3e-21
>seq134544
Length=252
Score = 354 bits (392), Expect = 2e-93
Identities = 228/249 (92%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 1287 TCGCAAACCACCCGTTGCCGTATTGACCTGAGTTCGGTCAACGGCATGGCGAACCCGTTT 1346
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 249 TCGCAAACCACCCGCTGCCGTATCGACCTGAGTTCGGTTAACGGCATGGCGAACCCGTTC 190
Query 1347 GCGCAGAAACGCCACGGCGGAAAGATACCGGTATTCACATTCCACTGGCGCAGCGACCCC 1406
|||||||| || |||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 189 GCGCAGAAGCGTCACGGCGGGAAGATACCGGTATTCACATTCCACTGGCGAAATGACCCG 130
Query 1407 CGTAAGGATGATGAGTGGTATCGCAGGGAATGCGAGAAAATCGACAATCCGGTGGTAGTG 1466
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 129 CGCAAGGATGAAGAGTGGTATCGCAGGGAATGCGAGAAAATCGACAATCCGGTGGTGGTG 70
Query 1467 GCTCAGGAGCTTGACCTGAACTACAGCGCATCAGCGGAAGGTGTCATGATCCCCTCAGAC 1526
|| ||||| ||||||||||||||||||||||| |||||||| ||| ||||||| || |||
Sbjct 69 GCGCAGGAACTTGACCTGAACTACAGCGCATCTGCGGAAGGCGTCCTGATCCCGTCCGAC 10
Query 1527 TGGGTACAG 1535
|||||||||
Sbjct 9 TGGGTACAG 1
>seq100757
Length=203
Score = 223 bits (246), Expect = 9e-54
Identities = 171/203 (84%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 7825 GCTATGAGTTTCAAAAGCGGTGTAACAACGAGGGTTGATAACGCTCAGGCAATACTGGAT 7884
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1 GCTATGAGTTTCAAAAGCGGTGTAACAACGAGGGTGGATAACGCTCAGGCCATTCTGGAT 60
Query 7885 GCGCTAAAGTCGCTAACCAAAAAGGATGTGCTGGTCGGTATCCCTGCGGAAGACAGCGAT 7944
||||| || || | | ||||| || |||||||| || ||||| | |||||||||||
Sbjct 61 GCGCTCAAATCCATCAGTAAAAAAGAAGTGCTGGTGGGCATCCCGGAAGAAGACAGCGAG 120
Query 7945 CGGGATGATGTGTCGTTCGGTAATGCCGGGATTGGGTATATCAACGAATACGGTTCACCT 8004
|| || ||||| |||| |||||||||||||| || || ||||||||||||| |||||
Sbjct 121 CGTGAGGATGTTCCGTTTGGTAATGCCGGGATCGGTTACGTCAACGAATACGGCTCACCA 180
Query 8005 GCACAAAACATCCCACCACGTCC 8027
|| ||||||||||| ||||| ||
Sbjct 181 GCGCAAAACATCCCCCCACGCCC 203
>seq117179
Length=223
Score = 208 bits (230), Expect = 2e-49
Identities = 179/224 (80%), Gaps = 23/224 (10%)
Strand=Plus/Plus
Query 7157 CAAAACAGGAGTTTGGCCGGGGACGGCATAACGTACCAGAAGAGGTCGCGTCGCACTGGT 7216
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1 CAAAACAGGAGTTTGGCCGGGGACGGCATAACGTGCCGGAAGAGGTTGCGTCGCACTGGT 60
Query 7217 TTACCCGGGCGCACGCTGAGCTTTCCGAAAGCG-GATCGAATGAAACTGATGACCAGCAA 7275
| |||| ||||||| |||||||||||||||||| ||| | || || ||||| | ||||
Sbjct 61 TCACCCAGGCGCACTCTGAGCTTTCCGAAAGCGTGATT-AGCGACACCGATGATCTGCAA 119
Query 7276 CCCGTTATTGACAGCCTTCAGGCGCAGATTGCCGATAAAGATAAAC-------------- 7321
||| |||| |||||||| || |||||||||||||| |||||||| |
Sbjct 120 CCCATTATCGACAGCCTGCAAGCGCAGATTGCCGACAAAGATAAGCAGATTGTCGATAAA 179
Query 7322 -------TGATTGCCGATCTGAAAGACGCTCTGCTCAAGCTGCA 7358
||||||||||||||||||| || ||||||||| ||||
Sbjct 180 GATCAGCTGATTGCCGATCTGAAAGAGGCGCTGCTCAAGATGCA 223
>seq149207
Length=294
Score = 116 bits (128), Expect = 1e-21
Identities = 187/269 (70%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 11660 GGCGGTGGAAGGTGCGGCGCTGTCCGTTGTTGCGTTTACGGCGAAAATTGCCTCCGGTAT 11719
|| ||||||||| || |||||| | |||| | ||||| | | || || ||| |
Sbjct 26 GGTGGTGGAAGGCGCAGCGCTGAGCATTGTCGGATTTACCACCCAGATCGCGAATGGTCT 85
Query 11720 GGATAATCTCTACTGGGCATCTCAACGCACCGGCGCGACGGTTCAGGGGATTCAGTCGAT 11779
|||||| | ||||||||||| || || || || || | || ||||| || | || |
Sbjct 86 GGATAAAATTTACTGGGCATCCCAGCGGACGGGGGCCAGCGTCCAGGGCATCAAAGCGCT 145
Query 11780 TGGCTACGCAGTTTCGCAGGTGGGCGGTAGTGTGGACGCGGCGCGGACTTCGCTGGAAAG 11839
||||| || | ||||| || | || | || |||| | | || || ||| |
Sbjct 146 GGGCTATGCCGCATCGCAAACCGGTGCCAGCGCCGAGTCGGCCATGTCCTCCCTTGAAGG 205
Query 11840 CCTCTCCCGGTTTGTGCGTAATAATCCCGGCGCGGAAGGCTTTCTGAACCGCCTGGGCGT 11899
|| | | || |||||| ||||| || ||||| ||||| |||||||| ||||||||
Sbjct 206 ACTGGCTGGTTTCATGCGTAGCAATCCGGGGGCGGAGGGCTTCCTGAACCGTCTGGGCGT 265
Query 11900 ACAGACCCGGGACGCCAGCGGGAATATGC 11928
||||||||| || |||||||| || ||||
Sbjct 266 ACAGACCCGCGATGCCAGCGGAAAGATGC 294
>seq116084
Length=221
Score = 114 bits (126), Expect = 3e-21
Identities = 150/206 (73%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 11953 GCGTCGGCCAGAAGCTCAGCAGCATGCCGTATTACCGGGCTAACCAGTATGCGCAGATGC 12012
|||| || || ||||||| || ||||||||||||||| || || || || ||||||||||
Sbjct 221 GCGTTGGGCAAAAGCTCAACAACATGCCGTATTACCGCGCGAAGCAATACGCGCAGATGC 162
Query 12013 TGGGCATTGATGAAAATACCCTTATGGCGATGCGCCGGGGTTTAGGGGGATTCTCCGGCC 12072
| ||||| |||||||| || || ||||||||||| || || | || || ||| |
Sbjct 161 TCGGCATCGATGAAAACACGCTGATGGCGATGCGGCGCGGCATGAATGGCTTTACCGCCG 102
Query 12073 AGTACAGCGCGATG--GCAAAGGCCATCGGTTTCAATGCTGACGAGGCGGCCAAAAGCTC 12130
| ||| ||||| ||||| | | || ||||| ||||| | ||||| ||
Sbjct 101 ATTACCAGTCGATGCTGCAAAAG--ACGGGGTTCAACGCTGATAAAGCGGCTGTTCAGTC 44
Query 12131 CAACAGGTTCATGACCTCCCTGCGCG 12156
||||| |||||||| ||| ||||||
Sbjct 43 CAACAAATTCATGACATCCATGCGCG 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129834421193936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |