Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannopterum_20brasilianus_20[genbank_20GCA_5F002174335.1_202017-06- 06] 266,364 sequences; 1,346,185,690 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq134544 354 2e-93 seq100757 223 9e-54 seq117179 208 2e-49 seq149207 116 1e-21 seq116084 114 3e-21 >seq134544 Length=252 Score = 354 bits (392), Expect = 2e-93 Identities = 228/249 (92%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 1287 TCGCAAACCACCCGTTGCCGTATTGACCTGAGTTCGGTCAACGGCATGGCGAACCCGTTT 1346 |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| Sbjct 249 TCGCAAACCACCCGCTGCCGTATCGACCTGAGTTCGGTTAACGGCATGGCGAACCCGTTC 190 Query 1347 GCGCAGAAACGCCACGGCGGAAAGATACCGGTATTCACATTCCACTGGCGCAGCGACCCC 1406 |||||||| || |||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct 189 GCGCAGAAGCGTCACGGCGGGAAGATACCGGTATTCACATTCCACTGGCGAAATGACCCG 130 Query 1407 CGTAAGGATGATGAGTGGTATCGCAGGGAATGCGAGAAAATCGACAATCCGGTGGTAGTG 1466 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 129 CGCAAGGATGAAGAGTGGTATCGCAGGGAATGCGAGAAAATCGACAATCCGGTGGTGGTG 70 Query 1467 GCTCAGGAGCTTGACCTGAACTACAGCGCATCAGCGGAAGGTGTCATGATCCCCTCAGAC 1526 || ||||| ||||||||||||||||||||||| |||||||| ||| ||||||| || ||| Sbjct 69 GCGCAGGAACTTGACCTGAACTACAGCGCATCTGCGGAAGGCGTCCTGATCCCGTCCGAC 10 Query 1527 TGGGTACAG 1535 ||||||||| Sbjct 9 TGGGTACAG 1 >seq100757 Length=203 Score = 223 bits (246), Expect = 9e-54 Identities = 171/203 (84%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 7825 GCTATGAGTTTCAAAAGCGGTGTAACAACGAGGGTTGATAACGCTCAGGCAATACTGGAT 7884 ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 1 GCTATGAGTTTCAAAAGCGGTGTAACAACGAGGGTGGATAACGCTCAGGCCATTCTGGAT 60 Query 7885 GCGCTAAAGTCGCTAACCAAAAAGGATGTGCTGGTCGGTATCCCTGCGGAAGACAGCGAT 7944 ||||| || || | | ||||| || |||||||| || ||||| | ||||||||||| Sbjct 61 GCGCTCAAATCCATCAGTAAAAAAGAAGTGCTGGTGGGCATCCCGGAAGAAGACAGCGAG 120 Query 7945 CGGGATGATGTGTCGTTCGGTAATGCCGGGATTGGGTATATCAACGAATACGGTTCACCT 8004 || || ||||| |||| |||||||||||||| || || ||||||||||||| ||||| Sbjct 121 CGTGAGGATGTTCCGTTTGGTAATGCCGGGATCGGTTACGTCAACGAATACGGCTCACCA 180 Query 8005 GCACAAAACATCCCACCACGTCC 8027 || ||||||||||| ||||| || Sbjct 181 GCGCAAAACATCCCCCCACGCCC 203 >seq117179 Length=223 Score = 208 bits (230), Expect = 2e-49 Identities = 179/224 (80%), Gaps = 23/224 (10%) Strand=Plus/Plus Query 7157 CAAAACAGGAGTTTGGCCGGGGACGGCATAACGTACCAGAAGAGGTCGCGTCGCACTGGT 7216 |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct 1 CAAAACAGGAGTTTGGCCGGGGACGGCATAACGTGCCGGAAGAGGTTGCGTCGCACTGGT 60 Query 7217 TTACCCGGGCGCACGCTGAGCTTTCCGAAAGCG-GATCGAATGAAACTGATGACCAGCAA 7275 | |||| ||||||| |||||||||||||||||| ||| | || || ||||| | |||| Sbjct 61 TCACCCAGGCGCACTCTGAGCTTTCCGAAAGCGTGATT-AGCGACACCGATGATCTGCAA 119 Query 7276 CCCGTTATTGACAGCCTTCAGGCGCAGATTGCCGATAAAGATAAAC-------------- 7321 ||| |||| |||||||| || |||||||||||||| |||||||| | Sbjct 120 CCCATTATCGACAGCCTGCAAGCGCAGATTGCCGACAAAGATAAGCAGATTGTCGATAAA 179 Query 7322 -------TGATTGCCGATCTGAAAGACGCTCTGCTCAAGCTGCA 7358 ||||||||||||||||||| || ||||||||| |||| Sbjct 180 GATCAGCTGATTGCCGATCTGAAAGAGGCGCTGCTCAAGATGCA 223 >seq149207 Length=294 Score = 116 bits (128), Expect = 1e-21 Identities = 187/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 11660 GGCGGTGGAAGGTGCGGCGCTGTCCGTTGTTGCGTTTACGGCGAAAATTGCCTCCGGTAT 11719 || ||||||||| || |||||| | |||| | ||||| | | || || ||| | Sbjct 26 GGTGGTGGAAGGCGCAGCGCTGAGCATTGTCGGATTTACCACCCAGATCGCGAATGGTCT 85 Query 11720 GGATAATCTCTACTGGGCATCTCAACGCACCGGCGCGACGGTTCAGGGGATTCAGTCGAT 11779 |||||| | ||||||||||| || || || || || | || ||||| || | || | Sbjct 86 GGATAAAATTTACTGGGCATCCCAGCGGACGGGGGCCAGCGTCCAGGGCATCAAAGCGCT 145 Query 11780 TGGCTACGCAGTTTCGCAGGTGGGCGGTAGTGTGGACGCGGCGCGGACTTCGCTGGAAAG 11839 ||||| || | ||||| || | || | || |||| | | || || ||| | Sbjct 146 GGGCTATGCCGCATCGCAAACCGGTGCCAGCGCCGAGTCGGCCATGTCCTCCCTTGAAGG 205 Query 11840 CCTCTCCCGGTTTGTGCGTAATAATCCCGGCGCGGAAGGCTTTCTGAACCGCCTGGGCGT 11899 || | | || |||||| ||||| || ||||| ||||| |||||||| |||||||| Sbjct 206 ACTGGCTGGTTTCATGCGTAGCAATCCGGGGGCGGAGGGCTTCCTGAACCGTCTGGGCGT 265 Query 11900 ACAGACCCGGGACGCCAGCGGGAATATGC 11928 ||||||||| || |||||||| || |||| Sbjct 266 ACAGACCCGCGATGCCAGCGGAAAGATGC 294 >seq116084 Length=221 Score = 114 bits (126), Expect = 3e-21 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 11953 GCGTCGGCCAGAAGCTCAGCAGCATGCCGTATTACCGGGCTAACCAGTATGCGCAGATGC 12012 |||| || || ||||||| || ||||||||||||||| || || || || |||||||||| Sbjct 221 GCGTTGGGCAAAAGCTCAACAACATGCCGTATTACCGCGCGAAGCAATACGCGCAGATGC 162 Query 12013 TGGGCATTGATGAAAATACCCTTATGGCGATGCGCCGGGGTTTAGGGGGATTCTCCGGCC 12072 | ||||| |||||||| || || ||||||||||| || || | || || ||| | Sbjct 161 TCGGCATCGATGAAAACACGCTGATGGCGATGCGGCGCGGCATGAATGGCTTTACCGCCG 102 Query 12073 AGTACAGCGCGATG--GCAAAGGCCATCGGTTTCAATGCTGACGAGGCGGCCAAAAGCTC 12130 | ||| ||||| ||||| | | || ||||| ||||| | ||||| || Sbjct 101 ATTACCAGTCGATGCTGCAAAAG--ACGGGGTTCAACGCTGATAAAGCGGCTGTTCAGTC 44 Query 12131 CAACAGGTTCATGACCTCCCTGCGCG 12156 ||||| |||||||| ||| |||||| Sbjct 43 CAACAAATTCATGACATCCATGCGCG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129834421193936